Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c03
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72506-4|CAA96619.1|  590|Caenorhabditis elegans Hypothetical pr...    33   0.14 
U28741-2|AAA68326.2|  377|Caenorhabditis elegans Hypothetical pr...    33   0.14 
U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U64836-2|AAG24060.2|  137|Caenorhabditis elegans Serpentine rece...    29   3.9  
U64836-1|AAX22289.1|  321|Caenorhabditis elegans Serpentine rece...    29   3.9  
U51995-2|AAA96071.1|  291|Caenorhabditis elegans F-box a protein...    27   9.1  

>Z72506-4|CAA96619.1|  590|Caenorhabditis elegans Hypothetical
           protein F07A5.3 protein.
          Length = 590

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
 Frame = +3

Query: 378 FSCFTNTINDAILSNMIIRNNS---MAFSLWEH--PTVEPLMKVYLFNYTNWEQVRDGDE 542
           ++ F++  +  ++ N+ +  NS   + +S +++  P V+ +MK Y FN TN ++V+    
Sbjct: 29  WAAFSSIYSTLVIKNLQLTENSDTSLGYSAFQYTSPQVDNIMKFYFFNVTNPDEVKYYSA 88

Query: 543 KKLHVEEVGPY 575
              ++ E+GP+
Sbjct: 89  AP-NLVEIGPF 98


>U28741-2|AAA68326.2|  377|Caenorhabditis elegans Hypothetical
           protein F35D2.2 protein.
          Length = 377

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = -1

Query: 530 PHLLPVSVVEEVYLHQWLHGGMLPQRKSH*VVPDYH 423
           P+     + ++++L Q L+GG + +R+ + ++P+YH
Sbjct: 338 PYYSTKDIYQQIFLSQQLYGGSVKRRRKYRIIPNYH 373


>U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical
           protein C44B7.10 protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -2

Query: 250 WPLPQLVQPGTVSTVSSLIKTFPTPGAGVETFSTSFVIIGTAVFLSPLRFSMFKSRLP 77
           + +P L + G +   +SLI+  P    G  +  TS      AV  SPL  +M    +P
Sbjct: 134 YEVPLLFRKGAIKLNASLIQVSPPDAFGFCSLGTSVDTARAAVTNSPLIIAMVNKNMP 191


>U64836-2|AAG24060.2|  137|Caenorhabditis elegans Serpentine
           receptor, class x protein92, isoform a protein.
          Length = 137

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = -2

Query: 496 YTFISGSTVG-CSHNEKAIELFRIIMLDKIASLIVFVKHENIVPI---KLRTKVVDRTTS 329
           +T+ SG+ V  C H+     +  II  ++++ L   VKH NI+PI    LR ++V  TT 
Sbjct: 76  WTYFSGTFVWECLHSFDGFIM--IIFNERLSFLKTKVKHINILPIVGGHLRQRLVSLTTL 133

Query: 328 S 326
           S
Sbjct: 134 S 134


>U64836-1|AAX22289.1|  321|Caenorhabditis elegans Serpentine
           receptor, class x protein92, isoform b protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = -2

Query: 496 YTFISGSTVG-CSHNEKAIELFRIIMLDKIASLIVFVKHENIVPI---KLRTKVVDRTTS 329
           +T+ SG+ V  C H+     +  II  ++++ L   VKH NI+PI    LR ++V  TT 
Sbjct: 260 WTYFSGTFVWECLHSFDGFIM--IIFNERLSFLKTKVKHINILPIVGGHLRQRLVSLTTL 317

Query: 328 S 326
           S
Sbjct: 318 S 318


>U51995-2|AAA96071.1|  291|Caenorhabditis elegans F-box a protein
           protein 52 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 540 EKKLHVEEVGPYVYSLSPALLTLANCRDEKTLNGSSF*GVAS 665
           +K +HV+E+G + +S    +LT+  C D K L      G+ S
Sbjct: 123 QKCVHVKEIGLHKFSFE-QVLTILPCFDAKQLKNIDLSGIKS 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,671
Number of Sequences: 27780
Number of extensions: 351231
Number of successful extensions: 965
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)