Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c03
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.49 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.49 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.5  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   4.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.1  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 501 FNYTNWEQVRDG-DEKKLHVEEVGPYVY 581
           F YT+WE+V +G   +K+  + VG Y +
Sbjct: 429 FQYTDWEEVYNGYIYQKMVADVVGDYFF 456


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 501 FNYTNWEQVRDG-DEKKLHVEEVGPYVY 581
           F YT+WE+V +G   +K+  + VG Y +
Sbjct: 429 FQYTDWEEVYNGYIYQKMVADVVGDYFF 456


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 271 WTPEHVNWPLPQLVQPGTV 215
           W P    WP    V+P TV
Sbjct: 574 WEPPRALWPTEWKVRPSTV 592


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 462 EHPTVEPLMKVYLFNYTNWEQVRDGDEKKLH 554
           EH  +  L   Y +N  N++++   + KKL+
Sbjct: 78  EHKIISSLSNNYNYNNNNYKKLYCNNYKKLY 108


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 462 EHPTVEPLMKVYLFNYTNWEQVRDGDEKKLH 554
           EH  +  L   Y +N  N++++   + KKL+
Sbjct: 78  EHKIISSLSNNYNYNNNNYKKLYCNNYKKLY 108


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 235 AAGEASSRVPESRNNGRRSAGDSSRIKN 318
           A G A++  P  RN G  +  +  R+K+
Sbjct: 531 AKGAAAAGQPSKRNGGETNKQELKRLKS 558


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 366 IGTIFSCFTNTINDAILSNMIIRN 437
           +GT F+C    +  +++S ++I N
Sbjct: 294 LGTYFNCIMFMVASSVVSTILILN 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,898
Number of Sequences: 438
Number of extensions: 4612
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)