Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20c02
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 32 0.097
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 29 0.52
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 28 1.2
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 26 4.8
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 26 4.8
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 26 6.4
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 6.4
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.4
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 8.4
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 31.9 bits (69), Expect = 0.097
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +1
Query: 196 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK---KNINYILNVMPVMQDERKMSKRKKKVI 366
N+++ +L+ + + N+D L+A VNFL K N ++ V M + +KR ++++
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQQLL 202
Query: 367 NNN 375
++N
Sbjct: 203 DHN 205
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 29.5 bits (63), Expect = 0.52
Identities = 13/68 (19%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +1
Query: 199 EKLLNKLESSSYN-KSNMDQLIAIVNFLEK--KNINYILNVMPVMQDERKMSKRKKKVIN 369
E + +S S++ + +++A++N ++ ++IN++ + + ++ K + K++V+
Sbjct: 421 EDEVTNFDSRSFSLRLRRSEIVALINTFDRLSRSINFVDDFKQIYSEQHKPASFKRRVLR 480
Query: 370 NNKYILFN 393
K +LF+
Sbjct: 481 RIKQLLFS 488
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +1
Query: 271 NFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPA 441
+ L +K N ++ V + + K + +K V+ N IL NS W IK+P S P
Sbjct: 902 SILYEKQKNLQASITEVSK-QLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPV 960
Query: 442 MWDLVKNTPELADFV 486
D N +L +
Sbjct: 961 SMDFTSNDEQLVQLL 975
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +1
Query: 316 PVMQDERKMSKRKKKVINNNKYILFNSWYTK 408
P++ + +K+S + K++ +N Y N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 196 NEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYI 303
NEK ++ + +S N+S + QL A + L +K ++YI
Sbjct: 307 NEKFISVVGTSEANQSALMQLYAALISLGRKIVSYI 342
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = +1
Query: 121 KGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 300
+ L+K+N+ PE+ +S + +LL L S N + + + L + ++
Sbjct: 394 ESLRKTNLSVKPEEITSRPHPLSQRVAELLYSLSMLSVNVVEAEPVARSASRLAQDYVSM 453
Query: 301 ILNVMPVMQDERKMSK 348
+ N+ + D+R+ S+
Sbjct: 454 LQNLCKTVNDKRRQSR 469
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 88 NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 255
++SS+ + F ++ + EQ S + K ++LN L YN N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -3
Query: 327 LHDRHYVEDIVNVLFF 280
L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -3
Query: 378 FIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFFQEIYNSN*LVHVGFVVRARFQFIQQLF 199
FI+ LL F F H V + V FFQ ++ S L + G + F +Q+ +
Sbjct: 172 FIIYFVTLLIFTIFQVGGGCAHNVWTLAIVRFFQGVFGSTPLANAGGTISDLFTPVQRTY 231
Query: 198 I 196
+
Sbjct: 232 V 232
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 343 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 474
S R++ V NNN +FN S++ KI + + +WD ++N +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,372
Number of Sequences: 5004
Number of extensions: 67237
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -