Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c02
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    30   1.5  
Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   5.9  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    28   5.9  
AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenase...    28   5.9  
U41547-5|AAX88831.1|  272|Caenorhabditis elegans C.elegans homeo...    28   7.8  

>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 172 TETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNI--NYILNVMPVMQDERKMS 345
           T +   CK +K    L S    + N+D  I  V+F +KK I   +  +V+    DE    
Sbjct: 33  TLSLGTCKQQKKKKNLYSDLACRKNVDIFIIYVSFEKKKEIFLEFFHHVLQEEHDEYSAF 92

Query: 346 KRKKKVINNNKYILFN 393
           K   +   + +Y++ N
Sbjct: 93  KEAYEEEESREYVIEN 108


>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/80 (27%), Positives = 40/80 (50%)
 Frame = +1

Query: 133 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNV 312
           K N+    EQ   TE  A+ +N+KLL  L   + ++  MDQ +   N ++K  + + L  
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELT- 178

Query: 313 MPVMQDERKMSKRKKKVINN 372
               Q+  K  K++++ I +
Sbjct: 179 --SCQNRFKQMKQERRHIED 196


>AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical
           protein Y104H12D.2 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 181 AAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 300
           AA  KNE LL+ L+  SYN++   Q++ I     K N NY
Sbjct: 34  AARTKNETLLSLLDKFSYNET--VQMVVIKQIGRKNNCNY 71


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 435 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 310
           A  PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = -3

Query: 516 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 355
           T LF++I +   IC+ G+  ++ P       L L+D+ +     V  ++F+ V   N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245

Query: 354 LAFGHFAFVLHD 319
              G FA VL +
Sbjct: 246 TNSGPFASVLRE 257


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 304  LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 465
            ++++P M    K S  K++     +Y   +  ++ +K KQ E  + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -2

Query: 685 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 527
           RL  C   +  Y+A    LL LP+ +    Q+    S +L RC   T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 537  DIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQLVKRDIQ 695
            ++  F+R   NS E++ TD      +     R LRNA   +   L  +K+ ++
Sbjct: 1345 ELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVE 1397


>AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenases,
           short chain protein9 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/66 (21%), Positives = 32/66 (48%)
 Frame = +1

Query: 265 IVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAM 444
           I  F++ +N+  + N   V++ E +    +  ++ NN Y    +    + +P + + P +
Sbjct: 67  IARFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPYV 123

Query: 445 WDLVKN 462
           WD + N
Sbjct: 124 WDTINN 129


>U41547-5|AAX88831.1|  272|Caenorhabditis elegans C.elegans homeobox
           protein 60 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
 Frame = +1

Query: 127 LQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNIN-YI 303
           + K   ++   +++ T +  V +N +    ++   +  SN+ Q I+      K NI    
Sbjct: 68  IMKQIQLDKDMEKALTNSEEVLRNHRDFRPIDEKDF--SNIRQSISKRFEHSKNNIRGEA 125

Query: 304 LNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVK 459
              + V++ E +   RK++  + N   +  +W+   +Q  +PS     +L K
Sbjct: 126 ATKILVLRREIEQQGRKRRNFDKNTTDILQNWFHDHRQNPYPSDQEKAELAK 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,474,620
Number of Sequences: 27780
Number of extensions: 391366
Number of successful extensions: 1134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)