Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20b19
(229 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 34 0.016
Z81497-6|CAB04082.2| 604|Caenorhabditis elegans Hypothetical pr... 29 0.59
Z75953-5|CAB00102.2| 604|Caenorhabditis elegans Hypothetical pr... 29 0.59
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 29 0.59
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 1.0
AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical ... 28 1.0
AC136145-1|AAN60521.2| 226|Caenorhabditis elegans Hypothetical ... 27 1.4
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 27 1.4
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 27 1.4
Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z74043-7|CAA98539.2| 705|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z79759-1|CAB02138.2| 841|Caenorhabditis elegans Hypothetical pr... 27 2.4
U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical pr... 27 2.4
AF153275-1|AAD54940.1| 301|Caenorhabditis elegans transcription... 27 2.4
AF003145-2|AAB57715.2| 301|Caenorhabditis elegans Runt related ... 27 2.4
AB027412-1|BAA77765.1| 301|Caenorhabditis elegans RNT-1 protein. 27 2.4
Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z81495-11|CAN99657.1| 339|Caenorhabditis elegans Hypothetical p... 26 3.1
Z81495-10|CAD57692.1| 480|Caenorhabditis elegans Hypothetical p... 26 3.1
Z81495-9|CAB04064.1| 389|Caenorhabditis elegans Hypothetical pr... 26 3.1
AL032644-11|CAN99705.1| 339|Caenorhabditis elegans Hypothetical... 26 3.1
AL032644-10|CAD57710.1| 480|Caenorhabditis elegans Hypothetical... 26 3.1
AL032644-9|CAA21673.1| 389|Caenorhabditis elegans Hypothetical ... 26 3.1
Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z81514-6|CAB62802.1| 712|Caenorhabditis elegans Hypothetical pr... 26 4.1
U80842-13|AAB37943.1| 208|Caenorhabditis elegans Hypothetical p... 26 4.1
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p... 25 7.2
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z35597-2|CAA84649.2| 254|Caenorhabditis elegans Hypothetical pr... 25 7.2
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 25 7.2
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein. 25 7.2
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 25 7.2
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 25 7.2
AL117200-6|CAB55058.1| 209|Caenorhabditis elegans Hypothetical ... 25 7.2
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ... 25 7.2
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 25 7.2
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 25 7.2
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 25 7.2
U39678-7|AAK39210.1| 193|Caenorhabditis elegans Hypothetical pr... 25 9.6
CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical ... 25 9.6
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 33.9 bits (74), Expect = 0.016
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 11 ALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLL--MVSDNTQDT 184
+L V ST + TS SK + VP++ S+ N +T + TLL +S +TQ T
Sbjct: 1387 SLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTSSTPTNPTGSTESSTLLSSTISGSTQHT 1446
Query: 185 NMSE 196
MS+
Sbjct: 1447 TMSK 1450
>Z81497-6|CAB04082.2| 604|Caenorhabditis elegans Hypothetical
protein F10C2.3 protein.
Length = 604
Score = 28.7 bits (61), Expect = 0.59
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 225 FFKCTKFFIYSDIFVSCVLSLTIKS 151
FF CT F++ D+F S +S +K+
Sbjct: 11 FFLCTTVFLFPDLFASSTISRNLKT 35
>Z75953-5|CAB00102.2| 604|Caenorhabditis elegans Hypothetical
protein F10C2.3 protein.
Length = 604
Score = 28.7 bits (61), Expect = 0.59
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 225 FFKCTKFFIYSDIFVSCVLSLTIKS 151
FF CT F++ D+F S +S +K+
Sbjct: 11 FFLCTTVFLFPDLFASSTISRNLKT 35
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 28.7 bits (61), Expect = 0.59
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 105 CLAGTEFFLFLLPLIEVGTYSVV 37
C AG FL +LPLI V TY++V
Sbjct: 739 CEAGLSTFLCMLPLIFVPTYAIV 761
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 29 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDT 184
AP+TT PT+ + + +VP ++ TT PT + T T
Sbjct: 195 APTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTT 246
>AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical
protein C46C11.1 protein.
Length = 943
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = +2
Query: 29 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQD 181
APST P +S S P + S+ TAA T DN QD
Sbjct: 751 APSTPLQQPKPLSHSSSMNGFNPPVHKRSLSQSLADTAASTAAYALDNLQD 801
>AC136145-1|AAN60521.2| 226|Caenorhabditis elegans Hypothetical
protein E_BE45912.2 protein.
Length = 226
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = -2
Query: 228 FFFKCTKFFIYSDIFVSCVLSLTIKSVGAAVVLRRFFIEDRCLAGTEFFLFLLPLIEV 55
+ + FF+Y+ IF C++ I S+ +++ L+ ++ +L LI V
Sbjct: 87 YSYDLASFFLYATIFCQCIIGWLIGSIVNKTKIKKSKYSKEILSRFDYIKWLFMLIIV 144
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 8 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 148
VA + P+ VP+ ISG + + SV + + S++ +R T A P
Sbjct: 493 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIP 537
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 8 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 148
VA + P+ VP+ ISG + + SV + + S++ +R T A P
Sbjct: 452 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIP 496
>Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical
protein F58G11.3a protein.
Length = 666
Score = 27.1 bits (57), Expect = 1.8
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +2
Query: 32 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDTNMSE*IKNF 211
PST +P I S R P K+ IK +++ PT+ +NT+ + E +
Sbjct: 217 PSTASSIPIFILRSGSRS---PVKKHVQIKTSSSSSHMPTITEFMNNTKRMMVKE-LPAS 272
Query: 212 VHLKK 226
VHL +
Sbjct: 273 VHLSE 277
>Z74043-7|CAA98539.2| 705|Caenorhabditis elegans Hypothetical
protein T19B10.5 protein.
Length = 705
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 32 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQ 178
P T PTSI+ + +R S +KQ+ ++ +R + DN+Q
Sbjct: 351 PLGTISTPTSIATTPQRCTSTDSKQKHALPPQREIIEPDSTTCADDNSQ 399
>Z79759-1|CAB02138.2| 841|Caenorhabditis elegans Hypothetical
protein ZK858.1 protein.
Length = 841
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 32 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKN 124
P + Y + + S K +N+ P +QR SI+N
Sbjct: 615 PPPSRYAAGTAAPSHKHRNAHPQRQRPSIRN 645
>U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical
protein C24G7.2 protein.
Length = 635
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 82 KKLSSGQTTIFYKKSPQHYCGSNTFNG 162
KKL + T+ K+ QH+C + T +G
Sbjct: 65 KKLRKLEGTVSIKRETQHFCETTTMHG 91
>AF153275-1|AAD54940.1| 301|Caenorhabditis elegans transcription
factor RUN protein.
Length = 301
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 14 LKLPVAP-STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 154
LK P +P S T+ TSI+ ++ SV +K+R ++ + +++PT+
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNSSSPTI 297
>AF003145-2|AAB57715.2| 301|Caenorhabditis elegans Runt related
protein 1 protein.
Length = 301
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 14 LKLPVAP-STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 154
LK P +P S T+ TSI+ ++ SV +K+R ++ + +++PT+
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNSSSPTI 297
>AB027412-1|BAA77765.1| 301|Caenorhabditis elegans RNT-1 protein.
Length = 301
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 14 LKLPVAP-STTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 154
LK P +P S T+ TSI+ ++ SV +K+R ++ + +++PT+
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNSSSPTI 297
>Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical
protein B0379.7 protein.
Length = 409
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 29 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRN 133
AP++TE + KK K S K+ +S KN++N
Sbjct: 206 APASTESKKSKKIKKKKNKKSKDKKKSNSRKNKKN 240
>Z81495-11|CAN99657.1| 339|Caenorhabditis elegans Hypothetical
protein Y51H1A.1c protein.
Length = 339
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 190 HICILCIIANH*KCWSRSSVAAIFYRRSLF 101
H C++C A H +CW S RR F
Sbjct: 291 HRCLVCFSAFHVECWRTSGDCPKCVRRQNF 320
>Z81495-10|CAD57692.1| 480|Caenorhabditis elegans Hypothetical
protein Y51H1A.1b protein.
Length = 480
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 190 HICILCIIANH*KCWSRSSVAAIFYRRSLF 101
H C++C A H +CW S RR F
Sbjct: 432 HRCLVCFSAFHVECWRTSGDCPKCVRRQNF 461
>Z81495-9|CAB04064.1| 389|Caenorhabditis elegans Hypothetical
protein Y51H1A.1a protein.
Length = 389
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 190 HICILCIIANH*KCWSRSSVAAIFYRRSLF 101
H C++C A H +CW S RR F
Sbjct: 341 HRCLVCFSAFHVECWRTSGDCPKCVRRQNF 370
>AL032644-11|CAN99705.1| 339|Caenorhabditis elegans Hypothetical
protein Y51H1A.1c protein.
Length = 339
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 190 HICILCIIANH*KCWSRSSVAAIFYRRSLF 101
H C++C A H +CW S RR F
Sbjct: 291 HRCLVCFSAFHVECWRTSGDCPKCVRRQNF 320
>AL032644-10|CAD57710.1| 480|Caenorhabditis elegans Hypothetical
protein Y51H1A.1b protein.
Length = 480
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 190 HICILCIIANH*KCWSRSSVAAIFYRRSLF 101
H C++C A H +CW S RR F
Sbjct: 432 HRCLVCFSAFHVECWRTSGDCPKCVRRQNF 461
>AL032644-9|CAA21673.1| 389|Caenorhabditis elegans Hypothetical
protein Y51H1A.1a protein.
Length = 389
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 190 HICILCIIANH*KCWSRSSVAAIFYRRSLF 101
H C++C A H +CW S RR F
Sbjct: 341 HRCLVCFSAFHVECWRTSGDCPKCVRRQNF 370
>Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical
protein T09F5.16 protein.
Length = 311
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 159 IKSVGAAVVLRRFFIEDRCLAGTEFFLFLLPLIEVGTYSVVDG 31
I+ V A +L FF G FF+FL+P++ + + +V G
Sbjct: 58 IQIVNAIYILYFFFTLFMAFFGATFFVFLIPVLLI-VFPLVTG 99
>Z81514-6|CAB62802.1| 712|Caenorhabditis elegans Hypothetical
protein F26F2.7 protein.
Length = 712
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = +2
Query: 23 PVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDTNMSE 196
P APS + +N+ + + ++ TTAAP S NT T+ E
Sbjct: 637 PPAPSMDQDPQLDTEDPVVTENNTNSNSEQASPVKKKTTAAPVTSSASTNTNATSSDE 694
>U80842-13|AAB37943.1| 208|Caenorhabditis elegans Hypothetical
protein ZC239.2 protein.
Length = 208
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 53 PTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQ 178
PT++S SK +N+ P + + T +P +L DN +
Sbjct: 92 PTTVSLSKIEQNATPPTIGDPVTSSSGDTDSPQILEQPDNNE 133
>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 135 VLRRFFIE--DRCLAGTEFFLFLLPLIEVGTY 46
V+R+F +E + L+ F LF+LPLI+ Y
Sbjct: 661 VIRKFAVEKLNEQLSPVTFHLFILPLIQALKY 692
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 32 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDT 184
PS++ VPTS S S+ +S A+ SS +++ A+ + + S T
Sbjct: 353 PSSSTTVPTSASTSESSTSSPMAETSSSSTTSQSSPASTSTVPESSTVGST 403
>Z35597-2|CAA84649.2| 254|Caenorhabditis elegans Hypothetical
protein C36E8.2 protein.
Length = 254
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 2 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIK 121
K+V K PST+ SIS RK + QR IK
Sbjct: 13 KSVRRKSATTPSTSSSSRPSISSQGNRKPILSVNQRQIIK 52
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter than
wild-typeprotein 6 protein.
Length = 1254
Score = 25.0 bits (52), Expect = 7.2
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +2
Query: 2 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQD 181
KT + P+T+E T + S+ SS ++TAA T S T +
Sbjct: 832 KTTSKTTTEKPTTSESATTETTTSEPSTTESTTVDTSSATTEESSTAAET-TTTSAETSE 890
Query: 182 TNMSE 196
T SE
Sbjct: 891 TTTSE 895
>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
Length = 1167
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 135 VLRRFFIE--DRCLAGTEFFLFLLPLIEVGTY 46
V+R+F +E + L+ F LF+LPLI+ Y
Sbjct: 682 VIRKFAVEKLNEQLSPVTFHLFILPLIQALKY 713
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 2 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNT 136
+TVA +L + V T + S + + P ++++++KNRR +
Sbjct: 1622 ETVAQRLRFENIRGDSVDTEETESSEEETPPPIRKKAAVKNRRGS 1666
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 2 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNT 136
+TVA +L + V T + S + + P ++++++KNRR +
Sbjct: 1656 ETVAQRLRFENIRGDSVDTEETESSEEETPPPIRKKAAVKNRRGS 1700
>AL117200-6|CAB55058.1| 209|Caenorhabditis elegans Hypothetical
protein Y50E8A.10 protein.
Length = 209
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/40 (22%), Positives = 24/40 (60%)
Frame = +2
Query: 23 PVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTA 142
P++ + + T++ +K+K S + ++S+ KN++ +A
Sbjct: 49 PISDAIPDSTRTALDKEEKKKRSKDSSKKSNKKNKKKKSA 88
>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 135 VLRRFFIE--DRCLAGTEFFLFLLPLIEVGTY 46
V+R+F +E + L+ F LF+LPLI+ Y
Sbjct: 661 VIRKFAVEKLNEQLSPVTFHLFILPLIQALKY 692
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 17 KLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDN 172
++PVAPST S +K + K+ ++K +T+A P+L+ S +
Sbjct: 779 RVPVAPSTPLSRRMSAPVVRKPTMTAEKKREITMKPSVSTSARPSLINTSSH 830
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 2 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNT 136
+TVA +L + V T + S + + P ++++++KNRR +
Sbjct: 1767 ETVAQRLRFENIRGDSVDTEETESSEEETPPPIRKKAAVKNRRGS 1811
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 2 KTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNT 136
+TVA +L + V T + S + + P ++++++KNRR +
Sbjct: 1686 ETVAQRLRFENIRGDSVDTEETESSEEETPPPIRKKAAVKNRRGS 1730
>U39678-7|AAK39210.1| 193|Caenorhabditis elegans Hypothetical
protein C39D10.5 protein.
Length = 193
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 23 PVAPSTTEYVPTS-ISGSKKRKNSVPAK 103
P S+T+ P++ ++GS+KRK+S P K
Sbjct: 72 PEVVSSTQPDPSAQLTGSRKRKSSSPKK 99
>CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical
protein K09E10.1 protein.
Length = 692
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 97 GQTTIFYKKSPQHYCGSNTFNG 162
G FY P++ C SNTF G
Sbjct: 204 GMIIYFYSTKPRNNCISNTFLG 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,318,377
Number of Sequences: 27780
Number of extensions: 94963
Number of successful extensions: 379
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 55
effective length of database: 11,212,298
effective search space used: 224245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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