Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b18
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    33   0.13 
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657           29   2.1  
11_06_0709 - 26487235-26487423,26488003-26488081,26488164-26488375     29   3.7  
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923...    28   5.0  
11_03_0181 - 11301759-11301838,11302294-11303095                       28   6.5  
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353...    27   8.7  
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833...    27   8.7  

>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
            26699321-26699416
          Length = 1515

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 286  QELNNIKSKIELYEAQVSTCKNVR-QIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVED 462
            +E+  ++ KI+ Y  Q+++ +    QIK N  S   T +++  Q  +  NK+F  +S   
Sbjct: 1342 REIQYLEQKIQKYSGQINSLEETLVQIKGNAESGTSTLVDQLDQLESHFNKSFSHFSARS 1401

Query: 463  SISSNEV 483
               S E+
Sbjct: 1402 FACSEEL 1408


>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
          Length = 1136

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +1

Query: 295 NNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLN---KNFITYSVEDS 465
           NN++  +  +   +S+   V  ++QNR S        +LQ LT L+    N I+ S+ DS
Sbjct: 279 NNLEGTVPAWLGNLSSLVFV-SLQQNRLSGHIPESLGRLQMLTSLDLSQNNLISGSIPDS 337

Query: 466 ISSNEVLDNIDLEYD 510
           + +   L ++ L+Y+
Sbjct: 338 LGNLGALSSLRLDYN 352


>11_06_0709 - 26487235-26487423,26488003-26488081,26488164-26488375
          Length = 159

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 499 LEYDDGVDFDVYDEYEPSSHWSNMTVSDAKALL 597
           +E+D   D  +  ++ PSS    MTV D  ALL
Sbjct: 104 IEWDSERDLPIVPQWTPSSRTRTMTVGDRHALL 136


>03_02_1025 +
           13289146-13289586,13291882-13292087,13292174-13292323,
           13292412-13292545,13292843-13292949,13293031-13293137,
           13293581-13293686,13294098-13294217,13294318-13294474,
           13295163-13295254,13295338-13295582,13295668-13296268,
           13296362-13296457,13296541-13296794,13297622-13297715,
           13299138-13299188
          Length = 986

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 376 SSNIKTRIEKQ-LQFL-TPLNKNFITYSVEDSISSNEVLDNIDLEYDDGVDFDVYDEYEP 549
           SSN K  +E++ LQF  TP N     + V   ++   +L  +D E DD V   +    E 
Sbjct: 513 SSNDKVAVEQEELQFASTPGNSGQGKFQVGFLLNRQTIL--VDTENDDSVSAVIQQAIEK 570

Query: 550 SSHW 561
           +++W
Sbjct: 571 TNYW 574


>11_03_0181 - 11301759-11301838,11302294-11303095
          Length = 293

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +2

Query: 464 AFQATKCWTTSIWNMT---TALILTF--TMNTNRPRI 559
           AF   KCWT+ +W+ T   T L+ T+  T +T+  R+
Sbjct: 229 AFPHVKCWTSPVWSATSRPTVLLSTWQVTCSTSSHRV 265


>05_04_0333 +
           20333243-20333329,20335048-20335110,20335276-20335359,
           20335720-20335827,20335969-20336141,20337135-20337246,
           20337468-20337548,20337635-20337697,20337779-20337880,
           20338070-20338194,20338317-20338527,20338625-20338699,
           20338990-20339043
          Length = 445

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 439 FITYSVEDSISSNEVLDNIDLEYD-DGVDFDVYDEYEP 549
           F++   E     +E+   IDL    D + FD+YD YEP
Sbjct: 353 FVSTEAETDHPESELKPGIDLLGQVDELFFDIYDRYEP 390


>05_03_0407 +
           13582595-13582681,13583067-13583129,13583289-13583372,
           13583757-13583864,13584018-13584190,13585190-13585301,
           13585424-13585504,13585611-13585673,13585764-13585865,
           13586063-13586187,13586316-13586526,13586614-13586688,
           13586950-13587003
          Length = 445

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 439 FITYSVEDSISSNEVLDNIDLEYD-DGVDFDVYDEYEP 549
           F++   E     +E+   IDL    D + FD+YD YEP
Sbjct: 353 FVSTEAETDNPQSELKPGIDLLGQVDELFFDIYDRYEP 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,762
Number of Sequences: 37544
Number of extensions: 239541
Number of successful extensions: 646
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)