Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b17
         (246 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    87   2e-19
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    28   0.20 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   0.35 
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    26   0.80 
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    25   1.4  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    24   2.4  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    24   2.4  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    23   4.3  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    23   4.3  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    23   4.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    23   4.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    23   5.6  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    23   5.6  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    23   7.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    23   7.4  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    23   7.4  
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    22   9.8  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    22   9.8  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    22   9.8  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    22   9.8  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    22   9.8  
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    22   9.8  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    22   9.8  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 87.4 bits (207), Expect = 2e-19
 Identities = 35/51 (68%), Positives = 43/51 (84%)
 Frame = +2

Query: 35  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 187
           M +HK+F  K+KLAK  +QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 1   MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 199 FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 107
           ++S+ L    +P TP S  +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 0.35
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 169  SPVTPLSVISNSVSCAHPYPLRNGS 95
            +P TP++V S++V+ AH Y    GS
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHGGS 1006


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 0.80
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 157 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSC 17
           P  +I +S S  HP PL +G VL +   +   NNK  +   +   SC
Sbjct: 109 PAMLILDSKSI-HPLPLTDGEVLHRWECEVDSNNKTTIDLKYWYCSC 154


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 87  FSFLANLRLIINVLWADILNNQVVKTKSK 1
           + F  ++ +IIN  W D  N  VV  ++K
Sbjct: 256 YDFPEDMNMIINCEWCDFDNQHVVLPRTK 284


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 231 YRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIV 133
           YRVFI LHL    A   +FVL +  L  +Y I+
Sbjct: 236 YRVFIELHLNEEIA--AAFVLQKPILPLIYNIL 266


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 83  LKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTK 178
           +K+ +P+P+W  ++ G     +     W R K
Sbjct: 23  VKELKPLPEWKSLKFGENFTDHMLIMKWNREK 54


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 184 LELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNK 53
           +++  +  TP  +I+  +   H   L   S L + +GQ A NNK
Sbjct: 344 VDISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNK 387


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 47  KTFIIKRKLAKKLKQNRPIPQW 112
           +T  +K+KL K    NRP+P W
Sbjct: 18  RTITVKQKLGK----NRPLPGW 35


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 91  LFQLFGQFALNNKRLMGRHFEQSSCQNKVK 2
           +F  F  + LN K +   HF  SSCQ++ K
Sbjct: 32  IFARFKFYPLN-KIVNYNHFHSSSCQSEAK 60


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 39   RPIRRLLLSANWPKS*NKTD 98
            RP++ +L   N PKS  K D
Sbjct: 1791 RPVKNVLFETNVPKSLRKVD 1810


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 85  QLFGQFALNNKRLMGRHFEQSSCQNKVK 2
           Q+  Q  +++K LMG H E +   N ++
Sbjct: 401 QIVAQTHIDSKSLMGLHIELAPAANDIQ 428


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +2

Query: 77  KKLKQNRPIPQWVRMRTGNTIRYNAKRR 160
           +K++  +P PQW++++    +  + K R
Sbjct: 76  EKMEVPKPTPQWMKLKDEGKLGKHRKNR 103


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 154 LSVISNSVSCAHPYPL 107
           L++++ S  C HP+PL
Sbjct: 493 LALVTTSQVCRHPHPL 508


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -1

Query: 213 LHLTHSQAYNLSFVLLQ*RLLALYRIVFPV 124
           LH+ H + Y +S +L +   +  Y+++ P+
Sbjct: 73  LHIGHVRVYTISDILSRYYRMKGYKVIHPM 102


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 222 FIRLHLTHSQAYNLSFVL 169
           FI+L  T   A+NL FVL
Sbjct: 160 FIKLFYTFQDAHNLYFVL 177


>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 89  QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 181
           ++ P+P+  RMR        AK R+W   K+
Sbjct: 16  EHEPVPKLFRMRLFAPNESVAKSRYWYFLKM 46


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 55  KRLMGRHFEQSSCQNKVK 2
           KRL+GR F++   Q  +K
Sbjct: 118 KRLIGRRFKEPEVQRDIK 135


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 107 EEWVCFVSAFWPI 69
           ++W+  VS FWP+
Sbjct: 187 KQWINHVSDFWPL 199


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 211 TFNTFTSLQLELCPSPVTPLSVISNSVSCA-HPYPLRNGSVLF 86
           T+N   +L L L  S +TPL    + + C+ H   L++   L+
Sbjct: 494 TWNFLLNLPLSLTISHITPLPENQSHIYCSIHSGMLQDSQKLY 536


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 56  IIKRKLAKKLKQNRPIPQWVRMR 124
           +I++ +A+  K++R +PQ  RMR
Sbjct: 587 VIEKAVARLKKEDRLLPQIGRMR 609


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 89  QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 181
           ++ P+P+  RMR        AK R+W   K+
Sbjct: 16  EHEPVPKLFRMRLFAPNESVAKSRYWYFLKM 46


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 54  LLLSANWPKS*NKTDPFLSG 113
           LL+  NW  +  K  PF++G
Sbjct: 203 LLMDKNWDMTVQKVYPFING 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 949,728
Number of Sequences: 5004
Number of extensions: 16307
Number of successful extensions: 62
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)