Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b13
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    30   0.60 
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       30   0.60 
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       30   0.60 
AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF038608-17|AAC25822.2|  425|Caenorhabditis elegans Hypothetical...    26   9.8  
AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine re...    26   9.8  

>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 140 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 262
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 140 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 262
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 140 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 262
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 161 CAVRKLFKQANSKHVFDHFGCSSNYCFNN 247
           C  R+ F +   K  F++F CSS    NN
Sbjct: 336 CRSRRSFTEVTKKRSFENFECSSTATMNN 364


>Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical
           protein T19C9.1 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 209 DHFGCSSNYCFNNYVCSI 262
           DHF C+ N CF +Y  S+
Sbjct: 158 DHFKCTVNACFYSYTLSV 175


>AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical
           protein F08E10.2 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 209 DHFGCSSNYCFNNYVCSI 262
           DHF C+ N CF +Y  S+
Sbjct: 158 DHFKCTVNACFYSYTLSV 175


>Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical
           protein F54B8.8 protein.
          Length = 285

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 209 DHFGCSSNYCFNNY 250
           D+F C  N CFNNY
Sbjct: 162 DNFHCMINQCFNNY 175


>AF038608-17|AAC25822.2|  425|Caenorhabditis elegans Hypothetical
           protein C09G12.9 protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 333 PPSATGFMNPLNATMRANPFMNTPQ 407
           PPS+T +  P    M  NP+MN PQ
Sbjct: 192 PPSSTPY--PSAGAMGYNPYMNVPQ 214


>AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 59 protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 209 DHFGCSSNYCFNNY 250
           ++FGCS N C++NY
Sbjct: 158 NNFGCSVNSCYHNY 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,173,106
Number of Sequences: 27780
Number of extensions: 105665
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)