Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b10
         (618 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.     276   5e-76
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.       226   4e-61
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    25   2.0  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   3.4  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   6.0  

>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score =  276 bits (676), Expect = 5e-76
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +3

Query: 150 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 329
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 330 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 509
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 510 MPKDIQLARRIRGERA 557
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score =  226 bits (553), Expect = 4e-61
 Identities = 110/115 (95%), Positives = 113/115 (98%)
 Frame = +3

Query: 156 RTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELL 335
           RTKQTARKSTGGKAPRKQLA KAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELL
Sbjct: 1   RTKQTARKSTGGKAPRKQLARKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL 60

Query: 336 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKR 500
           IRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 61  IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 115


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 16  WRQFHPPFSPTP 51
           WR  HPP  PTP
Sbjct: 421 WRATHPPVRPTP 432


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 413 GRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTNFTKSHCTRA 276
           G + T  +F +LSD +   L    TD QLS + +  N   +   +A
Sbjct: 803 GTITTGSAFVLLSDKTSLRLITTTTDHQLSEVELRPNLPANFVVKA 848


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 443 LACLLESSDGGRLETQISFEILS--DFSHKTL-ERQLTDKQLSRLLITTNFTKSHCTRAI 273
           L+C  ++  G R +T+     +S  DF    L E  L D   S LL   NF+   C R++
Sbjct: 80  LSCYYQNVRGLRTKTKEFHLAVSEADFDLIALTETWLVDNIPSALLFNNNFSVYRCDRSL 139

Query: 272 T 270
           +
Sbjct: 140 S 140


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,771
Number of Sequences: 2352
Number of extensions: 10635
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60553008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)