Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b06
         (533 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   3.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   5.2  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   6.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.8  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 78  DINADKNVVNAYDAID 125
           DIN  K +V ++DAID
Sbjct: 497 DINTWKMLVKSFDAID 512


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 36  KIDVKYHMPLHYQCDINADKNVVNAYDAIDVDPNKKFIIN 155
           K DVK  +P  +      D    N Y+   V PN   +I+
Sbjct: 487 KPDVKIFLPFRFHIYTPEDLFAPNTYNRHLVAPNGDHVIS 526


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 223 YVVASVLSTTSCLF 182
           YVVA++ +T+SC F
Sbjct: 238 YVVATLGTTSSCTF 251


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 93  KNVVNAYDAIDVDPNKKFIIN 155
           KNV  AY    +D N +F+++
Sbjct: 92  KNVTRAYCNKKIDRNLQFVVS 112


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 93  KNVVNAYDAIDVDPNKKFIIN 155
           KNV  AY    +D N +F+++
Sbjct: 92  KNVTRAYCNKKIDRNLQFVVS 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,237
Number of Sequences: 336
Number of extensions: 2210
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)