Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b06
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    30   0.25 
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.8  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    26   4.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.1  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   7.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   9.4  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    22   9.4  

>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 138 KKFIINHNHEQVDETNKQEVVDKTDATTYNS 230
           KKF++NH+   +D+ +    V   D T Y++
Sbjct: 183 KKFVVNHSETDIDKNDNHVSVQTEDGTIYHA 213


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 45  VKYHMPLHYQCDINADKNV-VNAYDAIDVDPNKKFIINHNHEQVDETNKQEVVDKTDATT 221
           VKYH P         ++ V  N YD +  +PN   II    +  DE N  + ++  D   
Sbjct: 198 VKYH-PTEVHPSWTVEEPVHYNTYDGVVNEPNSSVIIEELDDDYDELN--DPMNNNDTPI 254

Query: 222 YNS 230
            NS
Sbjct: 255 TNS 257


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 140 FVGVNIDSVIRIYNVFICVNVTLIM 66
           F  +N D+ I IY+ F+C +  LIM
Sbjct: 330 FPTLNPDAYIYIYSYFLCKDTVLIM 354


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 3    ETFNMDSSNCIKIDVKYHMPLHYQCDINADKNVVNAYDAIDVDPNKKFIINHNHEQVDET 182
            ET+ M+ +N     VK    + YQ +I+     V  +  ++VDP+K    +     +D T
Sbjct: 839  ETYQMEITN-----VKRFKLIIYQRNIHTGLETVYGHATLEVDPDKLKQGHGKDVWLDIT 893

Query: 183  NKQEVV 200
            NK +++
Sbjct: 894  NKGQIL 899


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = -2

Query: 217 VASVLSTTSCLFVSSTCS*L*LIINFLLGSTSIASYAFTTFLS 89
           + S ++++S +F+SS  S L    +++  +T+  S  FTT ++
Sbjct: 593 IVSSINSSSSVFISSVSSSLQYSSSYVTETTTSGSVGFTTTIA 635


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 242 FYDARIVCCCVSFIDDFLFVCFIDLFVIM 156
           F+  +I CC +  +DD+ +     +F+I+
Sbjct: 201 FFVFQIFCCVLWCLDDYWYFSLFSMFMII 229


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 22.2 bits (45), Expect(2) = 9.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 54  HMPLHYQCDINADKNVVNAYDAI 122
           H+ L Y+C  N+D   +  Y  +
Sbjct: 211 HVILSYECSTNSDTPEITQYQEV 233



 Score = 20.6 bits (41), Expect(2) = 9.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 147 IINHNHEQVDETNKQEVVDKTDATT 221
           +I     +VD  + Q VVD+   T+
Sbjct: 269 VIKEKSNEVDHKDSQHVVDEVAQTS 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,489
Number of Sequences: 5004
Number of extensions: 33278
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)