Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b06
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    32   0.23 
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    29   1.6  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    29   1.6  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z81581-8|CAB04661.2|  244|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 185 VCFIDLFVIMINYKFFVGVNIDSVIRIYNVFICVNVTLIM*RHMV 51
           VC I    + INY    G  +     I+NV ICV ++L+    MV
Sbjct: 208 VCLIAAVYVFINYAIGDGCGLPKFFVIFNVLICVAISLLSVSPMV 252


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 468  RFTSRILRVKHDQEMTSFVFQN*T 397
            RF S+ L VKHDQE  SF+  N T
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGT 2062


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 468  RFTSRILRVKHDQEMTSFVFQN*T 397
            RF S+ L VKHDQE  SF+  N T
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGT 2062


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 218 CCVSFIDDFLFVCFIDLFVIMINYKFFVGVNIDSVIRIYNVFIC 87
           C   F +      F+D   +++NYK+F+        R Y +++C
Sbjct: 198 CIRHFFEQHYKHLFLDSRHLLLNYKYFLRYQEKQEERAYGLYVC 241


>Z81581-8|CAB04661.2|  244|Caenorhabditis elegans Hypothetical
           protein T02E1.6 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 194 FLFVCFIDLFVIMINYKFFVGVN--IDSVIRIYNVFICVNVTLIM 66
           FLF+  +   +I+I + FFV  N  I  ++   NV I + V LI+
Sbjct: 115 FLFLELVIAMMILITWSFFVENNEMIPIILCFVNVIILIIVVLIL 159


>AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical
           protein Y48C3A.11 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 235 MQELYVVASVLSTTSCLFVSSTCS*L*LIINFL 137
           M  +  ++S+L+ T+   +S +CS L L INFL
Sbjct: 41  MLTITTLSSMLNPTNMFLISMSCSQLALCINFL 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,017,482
Number of Sequences: 27780
Number of extensions: 184620
Number of successful extensions: 402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)