Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b05
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.9  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   7.8  

>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 184 GYETLKRIFVAYCAPDRSEACQA 252
           G + LK++F+ YC P   E C++
Sbjct: 103 GIDVLKKLFLTYCIPYLLEKCES 125


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 456 ILENRGLTELEANSVESRYSGVLDGWIEDAPDDHHD 563
           I+   G+T+ +    ES+ + +++G+ ED  DD  +
Sbjct: 407 IVSTNGITDGDTEMQESKKNVIINGFNEDDEDDEDE 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,679
Number of Sequences: 5004
Number of extensions: 41676
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)