Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b05
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.8  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   6.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.5  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 431 PCNTYWVDHPGK 466
           P N Y++ HPGK
Sbjct: 141 PYNNYYIWHPGK 152


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 431 PCNTYWVDHPGK 466
           P N Y++ HPGK
Sbjct: 141 PYNNYYIWHPGK 152


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 461 QDDQPNKCYKDC 426
           QDDQ  KCY  C
Sbjct: 50  QDDQNLKCYLKC 61


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 21  IEEVPVIYPKDTLF*FKCFP 80
           IEE P +Y ++  F   C P
Sbjct: 419 IEEKPFVYVREIAFSESCLP 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,511
Number of Sequences: 438
Number of extensions: 2858
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)