Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b04
         (537 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    29   0.026
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           27   0.14 
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   3.0  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.9  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   9.1  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 0.026
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 88  VYQ*IVTNLIMADLKSPPFSDIKRPEEVVRM-TTNDSLKFAVLIGLIEVGQ 237
           +YQ + TNL++  L SP   DIK   E++ +  +N  +KF+   G++++ +
Sbjct: 317 MYQ-VTTNLVLKLLTSPLLPDIKEQVEILAVQVSNKKIKFS-SFGMLKISR 365


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 260 TPSCT*FRSSPDPSHSIITKSCFKIIQEY 346
           TP+C+   SSP PSHS  ++S F     Y
Sbjct: 193 TPTCSEASSSPTPSHS--SESSFSAASSY 219


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 387 LINYYKSTINYQSKYSWIIL 328
           L ++Y+S I YQ + S +IL
Sbjct: 40  LRSFYRSRIRYQGRISSLIL 59


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 421 FHQNRHFLRFMNLTFLFLIYLKQTRIKL 504
           FH NR+  R   +     + L + +IK+
Sbjct: 252 FHYNRYLTRRRRIEIAHTLVLSERQIKI 279


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 421 FHQNRHFLRFMNLTFLFLIYLKQTRIKL 504
           FH NR+  R   +     + L + +IK+
Sbjct: 252 FHYNRYLTRRRRIEIAHTLVLSERQIKI 279


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 421 FHQNRHFLRFMNLTFLFLIYLKQTRIKL 504
           FH NR+  R   +     + L + +IK+
Sbjct: 252 FHYNRYLTRRRRIEIAHTLVLSERQIKI 279


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 369 IYSS**ENRRTHLEAFIIPSKSSFSTFYEFNIL 467
           +YSS  EN  T +E F         T+  +NI+
Sbjct: 167 VYSSKCENNSTGVEHFFKKQFHYIFTYMPYNIV 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,288
Number of Sequences: 336
Number of extensions: 2404
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)