Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b04
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   1.8  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   5.4  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   7.2  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   7.2  

>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 288 DDRNQVQDGVHHFPVGNLSDFNQTDKNCK 202
           +DR  + D   HF +GN +DFN    + K
Sbjct: 371 EDRTHLSDHGAHFHLGNANDFNMQGSSRK 399


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 99  NCDKFNHGGLKITAF 143
           NCD FN  G +IT+F
Sbjct: 689 NCDSFNEPGTEITSF 703


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
 Frame = -1

Query: 414 MLLNEFFCFLIN--YYKSTINYQSKYSWIILKQDFVIME*DGSGDDRNQVQDGVHHFPVG 241
           ++ N+F  FLI   +  ST      +S+  LK+    +  D  G   + +Q  +  +P  
Sbjct: 299 LMKNKFGNFLIQKCFEYSTEAQLQSFSYF-LKKHVKELSIDAFGS--HVLQKSLEIYPER 355

Query: 240 NLSDFNQTDKNCKFQTIVRRHANHFFWSFYVTKRR 136
             ++  +    C   T+++RH+ H +  F+ T+R+
Sbjct: 356 FTNNLIEELIECLPATLMQRHSCHVWQKFFETRRK 390


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 77  STHDHKIQKNISFSAHMITHRSRIL 3
           S HD    K  SFS +M  H S +L
Sbjct: 440 SLHDQAFHKKNSFSINMTVHESLLL 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,401
Number of Sequences: 5004
Number of extensions: 39454
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)