Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b03
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.0  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    27   2.0  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    27   3.5  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    27   3.5  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    26   4.6  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   6.1  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 246 TCLSIFCASCASNEN--FMVILLPHLAICGNYRYR*EGQSCHHPPPVL 109
           T L   C  C   E   F+  L+PH   CG+   +  GQ C HP P+L
Sbjct: 253 TSLHYLCW-CGKQEKPEFVKNLVPHS--CGDPCGKTRGQDCEHPCPLL 297


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 317 KRAIRLTVKLLKPSRKSARELAAMKS 394
           K  +RL + LL+PS+ S  ++AAMK+
Sbjct: 115 KATLRLFIHLLQPSQPSMLQVAAMKT 140


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 276 TFAPSTAHISTCLSIFCASCASNENFMVILLPHLAI 169
           TF     H   C  +FC  C+S      + LPHL I
Sbjct: 184 TFTNRKHHCRNCGGVFCNQCSSK----TLSLPHLGI 215


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 475 QSRRKTRKCNKNKQVKLAKDKGRRNR 552
           +S++KT K   +K  KLAK++G R+R
Sbjct: 3   KSQKKTAKGRLDKWYKLAKEQGYRSR 28


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +1

Query: 289 NIRSRKLTLKKGDPANCEVVKTIQK------KCKRTCRYEKSSWSECSINGEMSRTDKLK 450
           N+RSRK  LK G      ++  +QK      +    C+    + +  S++  +S+ DK++
Sbjct: 166 NVRSRKSALKNGSEEFRRIMILVQKYAIHNDQVSFNCKKVGDTVASLSLSSRLSKADKIR 225


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -3

Query: 478 FGRKSNRCWT 449
           FGRKSN CWT
Sbjct: 9   FGRKSNFCWT 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,474
Number of Sequences: 5004
Number of extensions: 55414
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)