Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20b02
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    32   0.085
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    29   0.60 
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    27   3.2  
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    26   4.2  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   7.4  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   9.8  

>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 31.9 bits (69), Expect = 0.085
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +2

Query: 293 KLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLE 472
           +++A      Q + L+L   + A   S T   +D R+ A   S+  +  P      +  E
Sbjct: 83  RMLAEALGLPQPSALALT-SSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141

Query: 473 SSRSGHTLGRRRLSFVYRRHISTRY 547
            +RS H  G  R    YR H+S  +
Sbjct: 142 RTRSNHRHGSHRRHEPYRTHLSRHH 166


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 318 MDNVPDFHYHTKQTRSNAVRQNFPETNVRTP 410
           MD++ DF+++ K T SN  + N+   N RTP
Sbjct: 1   MDDLLDFNFYDKSTPSN--QNNYSNNNSRTP 29


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +3

Query: 99  TSTPAG-FTNVLNAPSVRNLGNNRYQPGYQLSNN--RFVSTSDINRITRNNDVPNIRNVF 269
           T TP    +N LN+  V N    +  P    S+N  RF  TS+ + I  + + P   +V+
Sbjct: 224 TYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERFKDTSEESIIFTSPNTPEHPSVY 283

Query: 270 QGISDPQI 293
           Q    P+I
Sbjct: 284 QTDITPEI 291


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 189 SNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPD 335
           SN+R V T+D N +    D+ N++     +S  Q+ ++R ++  ++  D
Sbjct: 200 SNHRMVYTADNNNLVYCYDIANLKTPLSVLSGHQL-AVRSIKSSNSAHD 247


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +2

Query: 221 KQNHS*QRCPQHTQCISGHFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQR 400
           K NH    CP    C++   +P    +AP+ +   RA +SLP Q +  +     +P   R
Sbjct: 404 KINHVLDTCPL---CLNYETQP----LAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHR 456

Query: 401 AHARRCSK 424
            +   C +
Sbjct: 457 INTLSCDE 464


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 244 MSPTYAMYFRAFQTLK*THCANCGAWTTCQTFITTPN 354
           M  T +MYF A + LK    A     + CQ     PN
Sbjct: 125 MLSTLSMYFEALKFLKHNPVAGKPVQSGCQVLFIVPN 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,441
Number of Sequences: 5004
Number of extensions: 58276
Number of successful extensions: 225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)