Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20b02
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 32 0.47
08_02_1330 + 26191062-26191314,26191894-26191961,26192125-261923... 32 0.47
02_05_0201 + 26687369-26689228 31 1.1
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855... 30 1.9
04_01_0260 - 3506672-3508981 30 1.9
02_02_0145 + 7163922-7165604 30 1.9
05_05_0057 + 21995018-21997006 29 3.3
03_02_1027 + 13422698-13422914,13424899-13424959,13425366-134254... 28 5.8
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 28 5.8
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 31.9 bits (69), Expect = 0.47
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Frame = +3
Query: 30 NLRRVNKLYPNQASFLADNTRLLTSTPAGF--TNVLNAPSVRNLGNNRYQPGYQLSNNRF 203
NL ++ N A + NT +L + F N + + ++GN +LSNN+
Sbjct: 488 NLHMLDLSGNNLAGSIPSNTAMLKNVVMLFLQNNEFSGSIIEDIGNLTKLEHLRLSNNQL 547
Query: 204 VST--SDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMD 323
ST + + ++ RN+F G I L+Q+ +MD
Sbjct: 548 SSTVPPSLFHLDSLIELDLSRNLFSGALPVDIGHLKQIYKMD 589
>08_02_1330 +
26191062-26191314,26191894-26191961,26192125-26192355,
26192736-26192837,26192893-26192955,26193910-26193984
Length = 263
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 228 ITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTKQT-RSNAVRQNFPETNVR 404
+ R + VP++R G+ PQ+NS Q+ + +VP+ K + V++ P N
Sbjct: 108 VMRKSSVPDLREKLSGVQRPQLNSTVQIPK--SVPEISTSAKPVQKREPVQKREPPVNAA 165
Query: 405 TP 410
P
Sbjct: 166 LP 167
>02_05_0201 + 26687369-26689228
Length = 619
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 508 PPPAKSMPTPATFKVLM*LCKRGFCC 431
PPP + P P T++ +CK+GF C
Sbjct: 23 PPPPQPPPPPLTYRHHCKVCKKGFMC 48
>06_03_0077 +
16284106-16284128,16284552-16284795,16285490-16285591,
16286347-16287057
Length = 359
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +2
Query: 341 LPHQTDAIQCSQTKLPR---DQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRL 511
LP A S+TK PR D A A R + TA + PF +H +E +G GRRR
Sbjct: 36 LPVLPLAPSASRTKSPRLVLDHLAKAYRVLETTAQEAPFELNHLYVEMGSAGDK-GRRRR 94
Query: 512 S 514
S
Sbjct: 95 S 95
>04_01_0260 - 3506672-3508981
Length = 769
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +3
Query: 198 RFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTKQTRSNAVR 377
RF+ + ++ R N++ P ++ G Q N LRQ R ++ ++ + Q + NA
Sbjct: 359 RFILSLNLFRFLVNSNNPTRYRMWSGTIG-QYNLLRQCTRQEDEKTSNFWSSQWKKNAPE 417
Query: 378 QNFPETNVRTPEGVQ 422
+ E G+Q
Sbjct: 418 DTWMEYEYHNSRGIQ 432
>02_02_0145 + 7163922-7165604
Length = 560
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 69 SFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDV 248
SF A+N + P + + N ++ NL N+ ++ N F ST N+I ++V
Sbjct: 475 SFTAENNQFSGELPTDMSRLANL-TMLNLAGNQLLTTVKIYINNFASTLPSNKIVSKSNV 533
Query: 249 PNIRNVFQG 275
I QG
Sbjct: 534 KEIGLQSQG 542
>05_05_0057 + 21995018-21997006
Length = 662
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +2
Query: 389 RDQRAHARRCSKRTAAKPPFT*SHENLESSR------SGHTLGRRRLSFVYRRHISTRYN 550
R A +RC+ +A+ F+ + L SSR +G+ + RRR R+ S RY+
Sbjct: 555 RGCNARMQRCNSNASARSSFSSNSGGLGSSRRSYVDGNGNVVKRRREECALERNRSARYS 614
Query: 551 QRHQ*N 568
H N
Sbjct: 615 PGHADN 620
>03_02_1027 +
13422698-13422914,13424899-13424959,13425366-13425464,
13428959-13429361
Length = 259
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = +2
Query: 263 CISGHFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSK 424
C++ H S+ +A + + AR L + + + D + H R C+K
Sbjct: 204 CLTAHATASDGKVAQLETELEVARDDLQKMKEIVASNDVAFQNDSKIHPRNCAK 257
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 150 NLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNV 329
N G ++ PGY SNN + S S + +N V + +Q + N+ + + N
Sbjct: 143 NAGAHQTAPGYATSNNYYQSNSWTGGSSGDNHVQS----YQSYTPSDTNAAQSSSSLPN- 197
Query: 330 PDFHYH 347
+HYH
Sbjct: 198 NSYHYH 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,461,185
Number of Sequences: 37544
Number of extensions: 411384
Number of successful extensions: 1174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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