Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a24
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    27   2.0  
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    26   3.5  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   3.5  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   3.5  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    26   3.5  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    26   4.7  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   8.2  

>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -2

Query: 537 DANLEYNIFIKHVTRFVGPRNGCEIFAFAHC-RFVHAH 427
           D+N+ Y +      R  G R G  +FA A C  F H H
Sbjct: 80  DSNMYYVLNTIRAKRVEGTRRGGSVFAMAICTTFPHVH 117


>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFYVCRHVDTFLDLCGGPGEFA 363
           R R   KLL+++++F +       +DLC  PG ++
Sbjct: 22  RARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWS 56


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 392 QSGFNDMV*LANSPGPPHRSKNVST 318
           Q G + M+ ++NSPG PH +  V T
Sbjct: 347 QEGKSHMILISNSPGEPHGAIGVIT 371


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFYVCRHVDTFLDLCGGPG 354
           R R   KL+++++K+         +DLC  PG
Sbjct: 26  RSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPG 57


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 253 TRRPRCWRKLLEIDKKFYVCRHVDTFLD 336
           TR  RC  +L E +K+    +H+ +F+D
Sbjct: 442 TREERCKNQLREYEKQMEYRKHLQSFID 469


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 275 RQHLGLRVGRLSNNFERAQ 219
           R+H+G  VGR  ++ ERAQ
Sbjct: 924 REHIGFYVGRTYHDLERAQ 942


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 334  PKTCQRVGKHKTFCRFLIVFANI*VCAL 251
            PK  ++V  H TF R  I    + VCA+
Sbjct: 1078 PKKARKVSGHTTFFRVGICLGKVLVCAV 1105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,441
Number of Sequences: 5004
Number of extensions: 48541
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)