Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a24
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667...    31   0.52 
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260...    29   3.6  
04_03_0189 + 12444797-12444976,12445057-12445204,12445574-124458...    27   8.4  
03_02_0094 - 5583932-5584036,5584137-5584200,5584305-5584387,558...    27   8.4  

>06_03_1314 +
           29266320-29266346,29266463-29266556,29266663-29266712,
           29266798-29266847,29266945-29267053,29267135-29267195,
           29267291-29267343,29267629-29267721,29268091-29268166,
           29268401-29268508,29268596-29268840
          Length = 321

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFYVCRHVDTFLDLCGGPGEFA 363
           R R   KLL+ID++F +   V   +DLC  PG ++
Sbjct: 22  RARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWS 56


>05_07_0148 +
           28024820-28025293,28025655-28025702,28026034-28026080,
           28026334-28026496,28026595-28026656,28026820-28027003,
           28027093-28027182,28027553-28027686,28027747-28027936,
           28028103-28029033,28029860-28030065
          Length = 842

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFYVCRHVDTFLDLCGGPGEFANYTMSLNPL 390
           R R   KLL++D +F         LDLC  PG +    ++  P+
Sbjct: 23  RSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNHAPV 66


>04_03_0189 +
           12444797-12444976,12445057-12445204,12445574-12445874,
           12445930-12446144,12446145-12446282,12446414-12446605,
           12446740-12446786
          Length = 406

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 214 VVCARSKLFDKRPTRRPRCWRKLLEIDKKFYVCRHVDTFL 333
           V CAR KLFD+ PTR    W  L+      +  R V   L
Sbjct: 2   VACAR-KLFDEMPTRDVVSWTSLVSSHAGVWDVREVSRVL 40


>03_02_0094 -
           5583932-5584036,5584137-5584200,5584305-5584387,
           5584523-5584588,5584711-5584801,5585259-5585392,
           5586219-5586413,5586886-5587015,5587873-5587958
          Length = 317

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 253 TRRPRCWRKLLEIDKKFYVCRHVDTFLDLCGGP 351
           T   RC  K+L+  KK  + R +    +LCGGP
Sbjct: 55  TNDERCIIKILKPVKKKKIKREIKILQNLCGGP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,746,687
Number of Sequences: 37544
Number of extensions: 311091
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)