Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20a24
(589 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC023584-1|AAH23584.1| 329|Homo sapiens FtsJ homolog 1 (E. coli... 32 1.7
AJ005892-1|CAA06749.1| 329|Homo sapiens JM23 protein. 32 1.7
AF063015-1|AAC33734.1| 327|Homo sapiens cell division protein p... 32 1.7
BC112107-1|AAI12108.1| 501|Homo sapiens tetratricopeptide repea... 31 2.3
BC105128-1|AAI05129.1| 501|Homo sapiens tetratricopeptide repea... 31 2.3
BC073796-1|AAH73796.1| 384|Homo sapiens TTC19 protein protein. 31 2.3
BC011698-1|AAH11698.2| 382|Homo sapiens TTC19 protein protein. 31 2.3
AK025958-1|BAB15296.1| 157|Homo sapiens protein ( Homo sapiens ... 31 2.3
AK000350-1|BAA91103.1| 273|Homo sapiens protein ( Homo sapiens ... 31 2.3
BC035230-1|AAH35230.2| 409|Homo sapiens zinc finger, DHHC-type ... 31 4.0
BC031265-1|AAH31265.1| 305|Homo sapiens tetraspanin 12 protein. 30 5.3
AY358703-1|AAQ89066.1| 305|Homo sapiens NET-2 protein. 30 5.3
AF124522-1|AAD17317.1| 305|Homo sapiens tetraspan NET-2 protein. 30 5.3
AC004456-1|AAQ96879.1| 305|Homo sapiens unknown protein. 30 5.3
>BC023584-1|AAH23584.1| 329|Homo sapiens FtsJ homolog 1 (E. coli)
protein.
Length = 329
Score = 31.9 bits (69), Expect = 1.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 259 RPRCWRKLLEIDKKFYVCRHVDTFLDLCGGPGEFA 363
R R KLL++DK+F + + V +DLC PG ++
Sbjct: 22 RARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWS 56
>AJ005892-1|CAA06749.1| 329|Homo sapiens JM23 protein.
Length = 329
Score = 31.9 bits (69), Expect = 1.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 259 RPRCWRKLLEIDKKFYVCRHVDTFLDLCGGPGEFA 363
R R KLL++DK+F + + V +DLC PG ++
Sbjct: 22 RARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWS 56
>AF063015-1|AAC33734.1| 327|Homo sapiens cell division protein
protein.
Length = 327
Score = 31.9 bits (69), Expect = 1.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 259 RPRCWRKLLEIDKKFYVCRHVDTFLDLCGGPGEFA 363
R R KLL++DK+F + + V +DLC PG ++
Sbjct: 22 RARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWS 56
>BC112107-1|AAI12108.1| 501|Homo sapiens tetratricopeptide repeat
domain 19 protein.
Length = 501
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 220 CARSKLFDKRPTRRPRCWRKLLEIDKKFYVCRHVDTFL 333
CAR LF K+P++ R + K L+I ++ RH T +
Sbjct: 364 CARYLLFSKQPSQAQRMYEKALQISEEIQGERHPQTIV 401
>BC105128-1|AAI05129.1| 501|Homo sapiens tetratricopeptide repeat
domain 19 protein.
Length = 501
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 220 CARSKLFDKRPTRRPRCWRKLLEIDKKFYVCRHVDTFL 333
CAR LF K+P++ R + K L+I ++ RH T +
Sbjct: 364 CARYLLFSKQPSQAQRMYEKALQISEEIQGERHPQTIV 401
>BC073796-1|AAH73796.1| 384|Homo sapiens TTC19 protein protein.
Length = 384
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 220 CARSKLFDKRPTRRPRCWRKLLEIDKKFYVCRHVDTFL 333
CAR LF K+P++ R + K L+I ++ RH T +
Sbjct: 247 CARYLLFSKQPSQAQRMYEKALQISEEIQGERHPQTIV 284
>BC011698-1|AAH11698.2| 382|Homo sapiens TTC19 protein protein.
Length = 382
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 220 CARSKLFDKRPTRRPRCWRKLLEIDKKFYVCRHVDTFL 333
CAR LF K+P++ R + K L+I ++ RH T +
Sbjct: 245 CARYLLFSKQPSQAQRMYEKALQISEEIQGERHPQTIV 282
>AK025958-1|BAB15296.1| 157|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22305 fis, clone HRC04991. ).
Length = 157
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 220 CARSKLFDKRPTRRPRCWRKLLEIDKKFYVCRHVDTFL 333
CAR LF K+P++ R + K L+I ++ RH T +
Sbjct: 20 CARYLLFSKQPSQAQRMYEKALQISEEIQGERHPQTIV 57
>AK000350-1|BAA91103.1| 273|Homo sapiens protein ( Homo sapiens
cDNA FLJ20343 fis, clone HEP13649. ).
Length = 273
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 220 CARSKLFDKRPTRRPRCWRKLLEIDKKFYVCRHVDTFL 333
CAR LF K+P++ R + K L+I ++ RH T +
Sbjct: 136 CARYLLFSKQPSQAQRMYEKALQISEEIQGERHPQTIV 173
>BC035230-1|AAH35230.2| 409|Homo sapiens zinc finger, DHHC-type
containing 23 protein.
Length = 409
Score = 30.7 bits (66), Expect = 4.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 307 VCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 438
+CR F L PG +ANY+ +L+ C Y V +T ++
Sbjct: 326 ICRDRSVFTALFYCPGVYANYSSALSFTCVWYSVIITAGMAYIF 369
>BC031265-1|AAH31265.1| 305|Homo sapiens tetraspanin 12 protein.
Length = 305
Score = 30.3 bits (65), Expect = 5.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 34 TIKRPMLILPMYFCSLFVLFC 96
T+KR +L+L YF SL V+FC
Sbjct: 85 TVKRNLLLLAWYFGSLLVIFC 105
>AY358703-1|AAQ89066.1| 305|Homo sapiens NET-2 protein.
Length = 305
Score = 30.3 bits (65), Expect = 5.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 34 TIKRPMLILPMYFCSLFVLFC 96
T+KR +L+L YF SL V+FC
Sbjct: 85 TVKRNLLLLAWYFGSLLVIFC 105
>AF124522-1|AAD17317.1| 305|Homo sapiens tetraspan NET-2 protein.
Length = 305
Score = 30.3 bits (65), Expect = 5.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 34 TIKRPMLILPMYFCSLFVLFC 96
T+KR +L+L YF SL V+FC
Sbjct: 85 TVKRNLLLLAWYFGSLLVIFC 105
>AC004456-1|AAQ96879.1| 305|Homo sapiens unknown protein.
Length = 305
Score = 30.3 bits (65), Expect = 5.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 34 TIKRPMLILPMYFCSLFVLFC 96
T+KR +L+L YF SL V+FC
Sbjct: 85 TVKRNLLLLAWYFGSLLVIFC 105
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,594,565
Number of Sequences: 237096
Number of extensions: 1660975
Number of successful extensions: 3517
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3517
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -