Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20a24
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical... 38 0.005
Z36238-6|CAA85279.2| 337|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z93382-7|CAB07618.1| 214|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z50071-7|CAA90405.3| 356|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z50071-6|CAL64000.2| 372|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z50071-5|CAH04718.2| 396|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical pr... 28 5.7
AC006832-4|AAF39996.1| 485|Caenorhabditis elegans Hypothetical ... 28 5.7
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 27 7.5
U53339-5|AAA96201.1| 342|Caenorhabditis elegans Serpentine rece... 27 9.9
>AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical
protein Y53F4B.13 protein.
Length = 927
Score = 37.9 bits (84), Expect = 0.005
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Frame = +1
Query: 328 FLDLCGGPGEFANYTMSLNPL--CKAYGVTLT-NNSVCVYKPTVCKRKNFTTITGPDKSG 498
F D+C GPG F+ Y + K +G TL + ++K T + F T G +G
Sbjct: 290 FADVCAGPGGFSEYMLWRKGFYNAKGFGFTLAGKDDFKLFKFTASSQYFFETFYGTKDNG 349
Query: 499 DVFDK-NV-VFEISIKCGNA---CDLVLADGSVDV 588
DV D N+ E I G + L++ADG V
Sbjct: 350 DVMDPVNIDSLEAHISRGTSGLGVHLMMADGGFSV 384
>Z36238-6|CAA85279.2| 337|Caenorhabditis elegans Hypothetical
protein R74.7 protein.
Length = 337
Score = 30.7 bits (66), Expect = 0.80
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 259 RPRCWRKLLEIDKKFYVCRHVDTFLDLCGGPGEFA 363
R R KL++ID +F + + V +DLC PG ++
Sbjct: 22 RARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWS 56
>Z93382-7|CAB07618.1| 214|Caenorhabditis elegans Hypothetical
protein F45G2.9 protein.
Length = 214
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 259 RPRCWRKLLEIDKKFYVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTN 420
R R KL+EI++KF + T +D+ PG + + P A GV L N
Sbjct: 33 RARSAFKLIEINEKFKFLKPESTVIDIGCAPGSWLQVVVQKCPNGYASGVDLQN 86
>Z50071-7|CAA90405.3| 356|Caenorhabditis elegans Hypothetical
protein T07D4.2a protein.
Length = 356
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 340 CGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVYKPTVCKRK 462
CG P E N+ L L +Y V + N C + T K K
Sbjct: 128 CGLPNEVHNFNKLLGKLKYSYKVVIGGNHECTFDDTFLKLK 168
>Z50071-6|CAL64000.2| 372|Caenorhabditis elegans Hypothetical
protein T07D4.2c protein.
Length = 372
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 340 CGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVYKPTVCKRK 462
CG P E N+ L L +Y V + N C + T K K
Sbjct: 144 CGLPNEVHNFNKLLGKLKYSYKVVIGGNHECTFDDTFLKLK 184
>Z50071-5|CAH04718.2| 396|Caenorhabditis elegans Hypothetical
protein T07D4.2b protein.
Length = 396
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 340 CGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVYKPTVCKRK 462
CG P E N+ L L +Y V + N C + T K K
Sbjct: 168 CGLPNEVHNFNKLLGKLKYSYKVVIGGNHECTFDDTFLKLK 208
>Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical
protein C54E10.1 protein.
Length = 872
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 226 RSKLFDKRPTRRPRCWRKLLEIDK--KFYVCRHV 321
R K+F KRP R C KLLE+ K K ++ R +
Sbjct: 477 RFKIFIKRPERGDVCASKLLEVMKMEKLHILRSI 510
>AC006832-4|AAF39996.1| 485|Caenorhabditis elegans Hypothetical
protein ZK355.4 protein.
Length = 485
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 346 GPGEFANYTMSLNPLCKAYGVTLTNNSV 429
G F N +M + C+ YG+++TNNS+
Sbjct: 108 GSLSFFNISMHMYFYCETYGLSITNNSL 135
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 376 SLNPLCKAYGVTLTNNSVCVYKPTVCKRKNFT 471
S +PLC GVT TN C + +C+ N T
Sbjct: 775 SYDPLCGTNGVTFTN--ACSLQKEICESANST 804
>U53339-5|AAA96201.1| 342|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 16 protein.
Length = 342
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 51 VNIAYVFLFFICIVLLNVLVVFSDTNRTTDTK 146
+NI Y+F FF+ I+ L +L V N+ +++
Sbjct: 187 LNILYIFCFFLAILALILLQVVRFVNKRRESR 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,870,427
Number of Sequences: 27780
Number of extensions: 292802
Number of successful extensions: 799
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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