Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a23
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33...    31   1.1  
03_01_0298 + 2318836-2319051,2321238-2323106                           29   3.4  
04_03_0128 - 11530618-11530838,11532683-11532809,11533746-115338...    29   4.5  
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388...    28   5.9  
04_04_0463 - 25397837-25399693,25402136-25402405                       28   7.8  

>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
            336577-336734,337180-337310,337385-337472,337587-337690,
            338346-338444,339060-339116,339262-339337,339519-339602,
            339969-340010,340128-340198,341516-341564,342370-342441,
            343149-343286,343393-343473,344166-344353,344591-345188,
            345274-345342,346729-346854,347048-347175,347986-348142,
            348342-348388,348472-348535,348691-348765,349292-349414,
            349797-349982,351179-351303,351390-351459,351974-352101,
            352585-352726,353065-353163,353239-353285,353598-353652,
            353758-353967,354686-354757,354836-354905,355231-355414,
            355521-355644,355732-355863,356252-356317,356805-356852,
            357572-357676,357728-357865,358097-358399,358482-358594,
            359082-359148,359236-359310,359395-359517,359610-359618,
            360156-360320,360401-360502,361545-361696,361794-361995,
            362079-362126,362215-362298,362613-362657,363302-363385,
            363890-363970,364044-364133,364217-364279,364824-364841,
            365238-365378,365494-365550,366091-366185,366275-366383,
            367067-367156,367308-367387,367480-367558,367742-367903,
            368005-368136,368335-368469,368553-368618,369317-369457,
            369575-369648,369685-369910
          Length = 2905

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
 Frame = +2

Query: 389  YTSKRDRFYESFKRY-HAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQ 565
            Y S++ R Y     Y       YE    +N     +++++ K  ++ T+ + + S  K +
Sbjct: 2165 YKSRQCRTYFHLAHYTDGLFKSYEERLSSNEWQAALRLRKYKSKELDTLMKRLKSSSKSE 2224

Query: 566  KT-YELAEFDLKNLSSLESYETLKIKLALSKYMAML 670
            KT Y +   +L+   +L+  E  KI+   +K+ A +
Sbjct: 2225 KTDYSVKIQELQKQLALDEEEAGKIQCTHAKFSAKI 2260


>03_01_0298 + 2318836-2319051,2321238-2323106
          Length = 694

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 248 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 346
           A   H F HF C SSN    NYVC + +  WK+L
Sbjct: 92  AECSHEF-HFHCISSNVNHGNYVCPVCRAEWKEL 124


>04_03_0128 -
           11530618-11530838,11532683-11532809,11533746-11533892,
           11533981-11534082,11534207-11534332,11535507-11535584,
           11535780-11535827,11536005-11536193
          Length = 345

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 117 FKSRRDFNSDELS*SPL-IKRYAGTVFENTCLTKKTFSF 4
           +KS    +SD+LS S   +K+  G + + TC TKK+ SF
Sbjct: 271 YKSEDGDSSDDLSDSSSEVKKNKGKLEKTTCKTKKSVSF 309


>04_04_0224 -
           23738105-23738273,23738364-23738472,23738702-23738804,
           23738895-23738926,23739342-23739592,23739639-23739754,
           23740271-23740526,23740760-23740847,23740985-23741062,
           23741238-23741313,23741532-23741590,23742639-23742711
          Length = 469

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 116 LNREGISTQTNFRNHLLLKDMQ 51
           +NREGIS   N  N LLLK +Q
Sbjct: 77  INREGISYYNNLINELLLKGVQ 98


>04_04_0463 - 25397837-25399693,25402136-25402405
          Length = 708

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 248 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 346
           A   H+F HF C SSN    NY C I +  WK++
Sbjct: 111 AECSHMF-HFHCISSNVKHGNYFCPICRAKWKEI 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,796,101
Number of Sequences: 37544
Number of extensions: 226021
Number of successful extensions: 462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)