Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a21
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.43 
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    29   0.75 
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.0  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    25   7.0  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   7.0  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   7.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 532 PPSPPKCLLENAPPSIPFAFLPISELPP 449
           PPS P  L  +APPS+P        LPP
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPP 451


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 363 AVDEYKQKEDIADILRFLVRYENRNLNGIGGSSLIGRNANG 485
           ++  Y+Q++ +  +L FL     RN   IG SSL   N +G
Sbjct: 96  SLKRYRQRKSVYPMLMFLRSSLLRNFGNIGNSSLYTENYSG 136


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 143 TIYEFTCTNCTLLQNHNSGFDSFALIC 223
           T+YEFTC NC L +     F+  AL C
Sbjct: 114 TLYEFTCENC-LQEGVAYTFEMVALQC 139


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 128 YC*LITIYEFTCTNCTLLQNHNSGFDSFALIC 223
           Y  +IT YE   T CT L+N+  G D   LIC
Sbjct: 313 YSIIITGYE---TVCTYLRNYGCGIDIDLLIC 341


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 532  PPSPPKCLLENAPPSIPFAFLPISELPPIP 443
            PP P    +   PPS P   LP S  P +P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 538  VDPPSPPKCLLENAPPSIPFAFLPISELPP 449
            V P +P       AP S P    P+S+LPP
Sbjct: 1458 VQPKAPGMVTNAPAPSSAPAPPAPVSQLPP 1487


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 372 EYKQKEDIADILRFLVR-YENRNLNGIGGSSLIGRNANGIEGGAFSSKHLGGLGGS 536
           E+++     D +R + + ++     GI   SL+G    G   G      LGG GG+
Sbjct: 192 EFRRAMTDPDTMRQMAQLHQQMGAAGIDPMSLMGGGLGGAGLGGLGGAGLGGFGGA 247


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 493 PSIPFAFLPISELPPIPFRLRFS 425
           PS+  +  P++ELPP+  R+  +
Sbjct: 390 PSLTLSSTPVAELPPLELRIHLA 412


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -1

Query: 493 PSIP-FAFLPISELPPIPF 440
           PSIP F  LP   +PPIPF
Sbjct: 155 PSIPGFGNLPNPAMPPIPF 173


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 532  PPSPPKCLLENAPPSIPFAFLPISELPP 449
            PP PP  L +  PPS      P S LPP
Sbjct: 1883 PPPPPMALPKAGPPSA----APTSALPP 1906


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,350
Number of Sequences: 5004
Number of extensions: 60232
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)