Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a21
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen prot...    30   1.6  
U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chai...    28   4.9  
Z83102-8|CAB05465.3|  325|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z29443-9|CAA82575.2|  292|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific ...    28   6.5  
AB019521-1|BAC66463.1|  292|Caenorhabditis elegans T-box transcr...    28   6.5  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z70284-9|CAA94280.1|  290|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen protein
           68 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +3

Query: 369 DEYKQKEDIADILRFLVRYENRNLNGIGG-----SSLIGRNANGIEGGAFSSKHLGGLGG 533
           DEY + E +A + R + R   +  NG+ G        + R A+  +GG      +GG GG
Sbjct: 72  DEYNKFESVAGVRRRIKRATYQKSNGVTGRLAHRRRAVARGASSYDGGFNEEVPVGGGGG 131


>U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chain
           (clathrin associatedcomplex) protein 2 protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 20  CIGLSILELNLFYISRVRNFIRTIN 94
           CI + I + NL+Y+  + NF+  +N
Sbjct: 68  CICVDITDNNLYYLEAIHNFVEVLN 92


>Z83102-8|CAB05465.3|  325|Caenorhabditis elegans Hypothetical
           protein C54C8.3 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 330 LHKNLTWLILFAVDEYKQKEDIADILRFLV-RYENRNL 440
           +H+N +WL L  ++E  Q++DI  I+      Y  RN+
Sbjct: 57  IHRNYSWLYLPEIEETSQEKDILIIVASRTDSYARRNI 94


>Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical
           protein C01G10.9 protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 432 DFHNVQEIVKCRQYLLFVYT 373
           D+ +V ++ KCR YLL VYT
Sbjct: 128 DYSDVVKLEKCRSYLLNVYT 147


>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
 Frame = +3

Query: 435 NLNGIGGSSLIGRNANGIEG-GAFSSKHLGGLGGSTLIGRNLNHLRGSS---MLQSGNVH 602
           ++N  GG    G+N NG  G   FS +   G    +    N N+ +GSS       G   
Sbjct: 141 SMNSFGGQGGYGQNQNGFGGQSGFSGQSGWGSNSLSSANSNGNNNQGSSSGYQNNQGRHQ 200

Query: 603 GLGGSSLIGKN 635
           G GG      N
Sbjct: 201 GQGGGHSSSSN 211


>Z29443-9|CAA82575.2|  292|Caenorhabditis elegans Hypothetical
           protein T07C4.6 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 520 PKCLLENAPPSIPFAFLPISELPPIP 443
           P  L EN P   PFAF  +S LP  P
Sbjct: 242 PHMLSENLPVQFPFAFPFLSPLPSTP 267


>U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific
           family, class qprotein 2 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 447 IGGSSLIGRNAN-GIEGGAFSSKHLGGLGGSTLIGRNL 557
           +GG   +G++A  G+ GGA      GG GG  + G+++
Sbjct: 346 MGGGGAVGQSAYFGVGGGAAGGAKTGGGGGGGIPGQSM 383


>AB019521-1|BAC66463.1|  292|Caenorhabditis elegans T-box
           transcription factor TBX-9 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 520 PKCLLENAPPSIPFAFLPISELPPIP 443
           P  L EN P   PFAF  +S LP  P
Sbjct: 242 PHMLSENLPVQFPFAFPFLSPLPSTP 267


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +3

Query: 444 GIGGSSLIGRNANGIEGGAFSSKHLGGLGGSTLIGRNLNHLRGSSMLQSGNVHGLGG 614
           G GGS   G ++ G   G +     GG GG    GR   +  G      G  +G GG
Sbjct: 5   GYGGSRSYGGSSGGGSRGGYGGGGRGGGGGGYSGGRGGGYGGGGGGGYGGGGYGGGG 61


>Z70284-9|CAA94280.1|  290|Caenorhabditis elegans Hypothetical
           protein K07F5.11 protein.
          Length = 290

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 447 IGGSSLIGRNAN-GIEGGAFSSKHLGGLGGSTLIGRNL 557
           +GG   +G++A  G+ GGA      GG GG  + G+++
Sbjct: 231 MGGGGAVGQSAYFGVGGGAAGGAKSGGGGGGGIPGQSM 268


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 444 GIGGSSLIGRNANGIEGGAFSSKHLGGLGGSTLIGRNLNHLRGS-SMLQSGNVHGLGGSS 620
           G GG S  GR  +G  G   S    GG GG    G +     GS    Q G+  G GGSS
Sbjct: 66  GRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQD-GGSSAGGWGGSQGGSQGGSSGGWGGSS 124


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
            C18H2.1 protein.
          Length = 1770

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 16   DLYWIVYT*IEFILHFTCAKFYSNNKPNPIPIVFYFRILLINHN 147
            D  + ++T  EFI      K   N  PNPIP +   R+   +HN
Sbjct: 1162 DKMYTLFTEDEFIHFMLKRKMNRNKSPNPIPAIDRKRLNEDSHN 1205


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 444 GIGGSSLIGRNANGIEGGAFSSKHLGGLGG 533
           G+GG    G    G  GG F    +GG GG
Sbjct: 169 GMGGGGYGGGGDGGYGGGGFGGGGMGGYGG 198


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -1

Query: 583 NMLDPLKWFKFLPIRVDPPSPPKCLLENAPPSIPFAFL---PISELPPI 446
           N  DP ++   +P+   PP+P   L++N PP    AFL   P S  PP+
Sbjct: 242 NFPDPSQFSSTVPL---PPAPSS-LIQNLPPPPQPAFLPQPPTSYAPPV 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,464,524
Number of Sequences: 27780
Number of extensions: 348123
Number of successful extensions: 1058
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)