Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a15
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    29   0.31 
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.2  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   1.6  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    26   2.2  
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    26   2.9  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   6.7  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   6.7  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    24   8.8  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -1

Query: 244 NEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKKITFTTDTILE 104
           N  I T +V  A    APDI  L      L S  N    FTT+T+ E
Sbjct: 535 NRTIHTYHVEGAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDE 581


>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 131 YFYH*YNFGESKKHKGFNAPEQTTIRALHDFDNE 30
           YFYH    G        +A  +TT+  L D+DN+
Sbjct: 235 YFYHASQEGLVSNDSNIHAGIRTTLSGLSDYDND 268


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 19/87 (21%), Positives = 39/87 (44%)
 Frame = -1

Query: 319 MGAQGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYN 140
           M  + K+++ +   +T L     +LNEA  ++        P P  N +QD+ + +Q    
Sbjct: 309 MENEKKLYEKVNTNRTLLRNANLTLNEAQQSVKSLTERQGPRPSDNGVQDLQEKMQEVNA 368

Query: 139 KKITFTTDTILENPKNIKDLMRLNKQQ 59
           +K+    +  LE+   +  +  L  Q+
Sbjct: 369 EKLQHENEK-LESSHELGSIRTLKAQK 394


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 184 NKLQDMIQDLQSEYNKKITFTTDTILENPKNIKDLMRLNK 65
           NK Q+MIQD+ +   ++I   T T +E  +N + + ++ +
Sbjct: 37  NKSQEMIQDIPARDREEIENITRTFVELQENYRLIEKIGE 76


>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 213 RPPTRPRQTSTSCKI*YKICSLNT--IKKLLLPLIQF 109
           RPP RPR  S  C     +    +  +KK LLP+I F
Sbjct: 133 RPPKRPRPMSNYCPKSSLMARAKSDFLKKALLPVILF 169


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 286 CEVKTQLCAIQESLNEAIS 230
           C + T+ C+I+E LNE  S
Sbjct: 247 CNLNTKACSIEELLNEIAS 265


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 175 QDMIQDLQSEYNKKITFTTDTILENPKNIKDLMRLNKQ 62
           QD  Q  +    +KI    D ILE+ K  KD    NK+
Sbjct: 194 QDESQGTEINLKQKIEEENDEILEDSKESKDENEENKE 231


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 211 AANSPAPDINKLQDMIQDLQSEYNKKITFTTDTILEN 101
           A N+P P+ ++L D++  +  +  +      DTIL N
Sbjct: 593 ACNTPPPNYDELFDVLSSISIQDCETDRANDDTILNN 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,333
Number of Sequences: 5004
Number of extensions: 33256
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)