Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a15
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    30   0.94 
07_03_0454 + 18364654-18366594                                         29   2.2  
06_01_0994 + 7719974-7721323                                           27   5.0  
04_03_0735 + 19141038-19143227                                         27   5.0  
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558...    27   8.7  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    27   8.7  

>10_08_0573 +
           18872720-18872781,18873261-18873610,18873917-18874334,
           18875172-18877180,18877390-18877398,18880291-18880398,
           18880399-18880469,18880769-18881785
          Length = 1347

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -1

Query: 205 NSPAPDINKLQDMIQD--LQSEYNKKITFTTD--TILENPKNIKDLMRLN 68
           + P+PDI+ L+DM  D  L ++      F T    IL+N  NIK+L +L+
Sbjct: 568 DDPSPDIHGLKDMPVDIGLLTDLQTLSRFVTSKRNILDNHSNIKELDKLD 617


>07_03_0454 + 18364654-18366594
          Length = 646

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 89  YVFWILQNCISGKSNF--FIVFRLQILYHILQLVDVWRGRVGGRMNVQS 229
           Y   +L+ C SGK+    F   +L ++   + ++D W+  V   +NVQS
Sbjct: 353 YFKTVLKECASGKAYIGRFCNAQLLVIKMSISVLDQWKNIVWNELNVQS 401


>06_01_0994 + 7719974-7721323
          Length = 449

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = +3

Query: 108 KIVSVVKVIFLLYSDCKSCII------SCSLLMSGAGELAAA*TFKVEMASLRLS*IAHS 269
           +I++ + V F L  +C+SCI       S + L+S  GELAA  +  V +  L  S   H+
Sbjct: 201 EILAALTVFFPLDEECRSCIASPPSLKSLASLLSHGGELAARVSAAVVLRELASSGDRHA 260


>04_03_0735 + 19141038-19143227
          Length = 729

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 280 VKTQ-LCAIQESLNEAISTLNVHAAANS 200
           +K Q LC   E +++ +STL VH AA S
Sbjct: 28  IKAQNLCPSLEGISQMVSTLEVHLAAES 55


>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
            15155932-15156024,15156282-15156351,15156716-15156912,
            15156946-15157215,15158620-15158757,15158841-15158930,
            15159041-15159247,15159987-15160154,15160300-15160503,
            15160584-15160670,15160748-15160861,15161689-15161835,
            15161914-15162063,15162211-15162276,15162376-15162480,
            15162625-15162798,15162930-15163154,15163534-15163590,
            15163858-15164019,15164234-15164302,15164391-15164471,
            15164823-15164925,15165011-15165156,15165285-15165359,
            15165441-15165508,15165586-15165667,15165745-15165858,
            15166358-15166476,15166692-15166781,15166862-15166988
          Length = 1382

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
 Frame = -1

Query: 331  SDLLMGAQGKVFDPLCEVKTQLCAIQESLNEAIST-LNVHAAANSPAPDINKLQDMIQDL 155
            S  LM  +  +   L   KT+L   +  L  +I   + + +       +I KLQ     L
Sbjct: 816  SSSLMKEKESIRKELDRTKTKLKETENKLKNSIQEKIKLESEKAEAQREIKKLQSQRTLL 875

Query: 154  QSEYNKKITFTTDTILENPKNIKDLMRLNKQ 62
            + +  K+ +FT D   E     K+L  +  Q
Sbjct: 876  ERDLRKRDSFTVDKRHEQSVKSKELAGIYDQ 906


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 250  SLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKKITFTTDTILENPKNI 89
            S++E I   N+H +A       N L   IQD  SE  +K   + + I EN  +I
Sbjct: 1837 SVHEKIED-NIHESAELKDLQDNSLVYFIQDETSELGEKTQISANRIEENDDHI 1889


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,991,240
Number of Sequences: 37544
Number of extensions: 204637
Number of successful extensions: 515
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)