Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a15
         (436 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14085-1|CAA32247.1|  400|Homo sapiens beta-1,4-galactosyltransf...    31   1.7  
M70432-1|AAB00776.1|  400|Homo sapiens beta-1,4-galactosyltransf...    31   1.7  
X55415-1|CAA39073.1|  398|Homo sapiens protein ( Human mRNA for ...    31   2.3  
X13223-1|CAA31611.1|  398|Homo sapiens lactose synthase protein.       31   2.3  
U10474-1|AAA68220.1|  340|Homo sapiens beta-1,4-galactosyltransf...    31   2.3  
M22921-1|AAA35936.1|  397|Homo sapiens protein ( Human beta 1,4-...    31   2.3  
D29805-1|BAA06188.1|  398|Homo sapiens beta-1,4-galactosyltransf...    31   2.3  
BC045773-1|AAH45773.1|  225|Homo sapiens B4GALT1 protein protein.      31   2.3  
AL161445-4|CAD13306.1|  398|Homo sapiens UDP-Gal:betaGlcNAc beta...    31   2.3  
Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of...    29   6.9  
S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein.          29   6.9  
D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein.               29   6.9  
BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural mainten...    29   6.9  
AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance ...    29   6.9  

>X14085-1|CAA32247.1|  400|Homo sapiens
          beta-1,4-galactosyltransferase (AA -77 to 323) protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 4  LTSVALPGSSLSKSCKALIVVCS 72
          L+  A+PG+SL ++C+ L+ VC+
Sbjct: 8  LSGAAMPGASLQRACRLLVAVCA 30


>M70432-1|AAB00776.1|  400|Homo sapiens
          beta-1,4-galactosyltransferase protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 4  LTSVALPGSSLSKSCKALIVVCS 72
          L+  A+PG+SL ++C+ L+ VC+
Sbjct: 8  LSGAAMPGASLQRACRLLVAVCA 30


>X55415-1|CAA39073.1|  398|Homo sapiens protein ( Human mRNA for
          UDP_galactose:N-acetylglucosaminide-(beta 1->4)
          galactosyltransferase. ).
          Length = 398

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 10 SVALPGSSLSKSCKALIVVCS 72
          S A+PG+SL ++C+ L+ VC+
Sbjct: 11 SAAMPGASLQRACRLLVAVCA 31


>X13223-1|CAA31611.1|  398|Homo sapiens lactose synthase protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 10 SVALPGSSLSKSCKALIVVCS 72
          S A+PG+SL ++C+ L+ VC+
Sbjct: 11 SAAMPGASLQRACRLLVAVCA 31


>U10474-1|AAA68220.1|  340|Homo sapiens
          beta-1,4-galactosyltransferase protein.
          Length = 340

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 4  LTSVALPGSSLSKSCKALIVVC 69
          L+  A+PG+SL ++C+ L+ VC
Sbjct: 8  LSGAAMPGASLQRACRLLVAVC 29


>M22921-1|AAA35936.1|  397|Homo sapiens protein ( Human beta
          1,4-galactosyl-transferase mRNA, complete cds. ).
          Length = 397

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 4  LTSVALPGSSLSKSCKALIVVC 69
          L+  A+PG+SL ++C+ L+ VC
Sbjct: 8  LSGAAMPGASLQRACRLLVAVC 29


>D29805-1|BAA06188.1|  398|Homo sapiens
          beta-1,4-galactosyltransferase protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 10 SVALPGSSLSKSCKALIVVCS 72
          S A+PG+SL ++C+ L+ VC+
Sbjct: 11 SAAMPGASLQRACRLLVAVCA 31


>BC045773-1|AAH45773.1|  225|Homo sapiens B4GALT1 protein protein.
          Length = 225

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 10 SVALPGSSLSKSCKALIVVCS 72
          S A+PG+SL ++C+ L+ VC+
Sbjct: 11 SAAMPGASLQRACRLLVAVCA 31


>AL161445-4|CAD13306.1|  398|Homo sapiens UDP-Gal:betaGlcNAc beta
          1,4-galactosyltransferase, polypeptide 1 protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 10 SVALPGSSLSKSCKALIVVCS 72
          S A+PG+SL ++C+ L+ VC+
Sbjct: 11 SAAMPGASLQRACRLLVAVCA 31


>Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of
            chromosomes 1A protein.
          Length = 1233

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 283  EVKTQLCAIQESLNEAISTLNVHAAANSPAPD-INKLQDMIQDLQSEY 143
            E+K ++  +Q+ LNE  S L   AA N  A + +  ++D  Q+   E+
Sbjct: 998  EIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEF 1045


>S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein.
          Length = 1233

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 283  EVKTQLCAIQESLNEAISTLNVHAAANSPAPD-INKLQDMIQDLQSEY 143
            E+K ++  +Q+ LNE  S L   AA N  A + +  ++D  Q+   E+
Sbjct: 998  EIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEF 1045


>D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein.
          Length = 1233

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 283  EVKTQLCAIQESLNEAISTLNVHAAANSPAPD-INKLQDMIQDLQSEY 143
            E+K ++  +Q+ LNE  S L   AA N  A + +  ++D  Q+   E+
Sbjct: 998  EIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEF 1045


>BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural maintenance
            of chromosomes 1-like 1 protein.
          Length = 1233

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 283  EVKTQLCAIQESLNEAISTLNVHAAANSPAPD-INKLQDMIQDLQSEY 143
            E+K ++  +Q+ LNE  S L   AA N  A + +  ++D  Q+   E+
Sbjct: 998  EIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEF 1045


>AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance of
            chromosomes 1A protein.
          Length = 1233

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 283  EVKTQLCAIQESLNEAISTLNVHAAANSPAPD-INKLQDMIQDLQSEY 143
            E+K ++  +Q+ LNE  S L   AA N  A + +  ++D  Q+   E+
Sbjct: 998  EIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEF 1045


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,552,141
Number of Sequences: 237096
Number of extensions: 1153305
Number of successful extensions: 6892
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6892
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)