Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a12
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    30   1.3  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   2.2  
Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    29   3.8  
U58755-2|AAB00692.1|  362|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical...    28   5.1  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    28   5.1  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    28   5.1  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine re...    27   8.9  

>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +3

Query: 474 PPLHPLALLSAVSPLCI----KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 638
           P  +P+  +S +SP         P+P  + T+T  +NP   TPTT   TS   N ++P+
Sbjct: 467 PTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPH 524


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 514 PYASSHPPLRSRLHQPDHQIPDS 582
           P +S HPPL S  H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +3

Query: 474 PPLHPLALLSAVSPLCI----KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 635
           P  +P+  +S +SP         P+P  + T+T  +NP   TPTT  + +I  +P  P
Sbjct: 467 PTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAP 522


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 498  LSAVSPLCIKPP-SPAISATSTRSSNPRFHTPTTPDLTSISI 620
            +  VS  C++PP +P  + ++T ++ P+  T +T   TS +I
Sbjct: 1142 IDTVSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPSTSTAI 1183


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 352
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical
           protein ZK930.7 protein.
          Length = 167

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 525 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLT 632
           KPP+P+     T   N   + P++P  T  S  PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136


>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 495 MREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAE 388
           + ++ GV   +PP  VT+ V+       G+LR+ AE
Sbjct: 233 LTQNNGVKINIPPPHVTNEVISVTGEKDGVLRVAAE 268


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 522 IKPPSPAISATSTRSSNPRFHTPTTPD-LTSISINPLTP 635
           +   SPAI +T+T +++P+  T  TP+ +T++    + P
Sbjct: 266 VSSDSPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304


>U58755-2|AAB00692.1|  362|Caenorhabditis elegans Hypothetical
           protein C34D4.10 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 480 LHPLALLSAVSPLCIKPPSPAISATSTRSSN 572
           L PL    A++P+CI+P  P IS+ +   +N
Sbjct: 234 LDPLLDYPALAPICIRPEVPRISSDAEHVTN 264


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +3

Query: 474 PPLHPLALLSAVSPLCI----KPPSPAISATSTRSSNPRFHTPTT 596
           P  +P+  +S +SP         P+P  + T+T  +NP   TPTT
Sbjct: 467 PTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTT 511


>AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical
           protein Y56A3A.21 protein.
          Length = 159

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 489 LALLSAVSPLCIKPPSPAISATSTRSSNPRFHTPTT 596
           +AL    S LC K  SP  SA+S  +++  FH  TT
Sbjct: 6   VALCLVASALCAKCESPKYSASSFSTTDGFFHYKTT 41


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 510 SPLCIKPPSPAISATSTRSS--NPRFHTPTTPDL 605
           SP  ++ P+ + S+T  ++S  NP++H PT  DL
Sbjct: 580 SPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDL 613


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 510 SPLCIKPPSPAISATSTRSS--NPRFHTPTTPDL 605
           SP  ++ P+ + S+T  ++S  NP++H PT  DL
Sbjct: 482 SPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDL 515


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +2

Query: 431 WTTADVTVEGGNVL-ATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRLN 607
           W T D      +   A P  SR T+   AL H A      GY  P ++  +   +  RL+
Sbjct: 24  WKTEDAPRRNNHPAPAPPKPSRPTVDASALQHAAARLRKTGYNEP-VRGDVENLSDGRLD 82

Query: 608 IHFHQSPD 631
               Q PD
Sbjct: 83  RPHQQLPD 90


>U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical
           protein F45E4.3b protein.
          Length = 836

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 516 LCIKPPSPAISATSTRSSNPRFHTPTT 596
           + ++PPSPA+SA S R    R+H PT+
Sbjct: 267 ISMQPPSPAVSAFSPR----RYHHPTS 289


>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
           protein F45E4.3a protein.
          Length = 1231

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 516 LCIKPPSPAISATSTRSSNPRFHTPTT 596
           + ++PPSPA+SA S R    R+H PT+
Sbjct: 267 ISMQPPSPAVSAFSPR----RYHHPTS 289


>AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein56 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 398 SLKIPVTVDLCWTT-ADV--TVEGGNVLATPSSSRITIGGLALM 520
           ++KIP+ + L W+T  D+  TV  G  +  PS+S + +G L  +
Sbjct: 56  NMKIPLLISLAWSTNLDLMFTVYSGPYIFFPSASGVPLGLLGYL 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,795,758
Number of Sequences: 27780
Number of extensions: 275348
Number of successful extensions: 1317
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)