Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a08
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4BX74 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_O10282 Cluster: Uncharacterized 73.1 kDa protein precur...    33   9.0  

>UniRef50_A4BX74 Cluster: Putative uncharacterized protein; n=1;
           Polaribacter irgensii 23-P|Rep: Putative uncharacterized
           protein - Polaribacter irgensii 23-P
          Length = 217

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -1

Query: 567 STVYFPQAYVMEKLYVKMTDCVQSLWYFLNIIRYL*VCYIVLQQSLVGLSNASIQP-RIF 391
           S+ YF  +Y + K+ +     V   W+FL+++ Y  + YI+L    +  S  +I    IF
Sbjct: 67  SSFYFGLSYALPKIVLNNAKKVYKKWFFLSLLVYF-IPYILLDNVNITFSKIAINDLNIF 125

Query: 390 LTVL 379
           L +L
Sbjct: 126 LQIL 129


>UniRef50_O10282 Cluster: Uncharacterized 73.1 kDa protein
           precursor; n=6; Nucleopolyhedrovirus|Rep:
           Uncharacterized 73.1 kDa protein precursor - Orgyia
           pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
          Length = 657

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 222 YVVRLTTVTFPPPPHSDVTVAVHVFLFTHLIMSPSTVGVYCSLGRLAR 79
           +  R +    P PPH   T+ V+V L   ++ +   VG YC+  R  +
Sbjct: 550 FAPRRSDAAAPDPPHEKPTMLVYVLLGVGVLSALCVVGAYCAFRRYCK 597


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,589,932
Number of Sequences: 1657284
Number of extensions: 12055554
Number of successful extensions: 26655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26648
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)