Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a08
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    28   1.1  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   6.0  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   6.0  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    26   6.0  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 151 VFIYAPHYESEHGGRLLFSRPPRSPIVCLVA 59
           +FI   H +S HGGR+    P    ++C VA
Sbjct: 25  LFINNQHVDSVHGGRVKVYSPSTEKLICEVA 55


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 16  AWERRSESQYGQLIERLGKQ*ASEAAERTIDAHRARTHNE 135
           +W++R E+ Y    ++  +Q A EAAE+       R+ +E
Sbjct: 769 SWDQRVEAGYKLAAQQKAEQEAREAAEKAASEAAERSSSE 808


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 139 APHYESEHGGRLLFSR 92
           APHYE ++G RLL  R
Sbjct: 331 APHYELDNGNRLLSKR 346


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 443 YSKALLDSRMPAFNLEYSSRFS 378
           +S A LDS  PA  L+Y+S+FS
Sbjct: 60  FSVASLDSTEPASFLQYNSKFS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,996
Number of Sequences: 5004
Number of extensions: 53429
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)