Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a08
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0028 - 9080650-9080667,9080701-9080794,9082099-9082185,908...    31   1.2  
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    28   8.3  

>11_03_0028 -
           9080650-9080667,9080701-9080794,9082099-9082185,
           9082276-9082333,9083535-9083598,9083837-9083898,
           9083976-9084027,9084410-9084530,9085369-9085463
          Length = 216

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 415 CQHST*NIPHGSHVGSGFHRCNVFQDFSKQSFECGS 308
           C+HS+ ++ H +   S FH C + Q  S  S + GS
Sbjct: 103 CRHSSASVVHENAYASDFHHCFLLQQNSSGSADSGS 138


>01_01_0328 -
           2664412-2664535,2665388-2665465,2667784-2667895,
           2668344-2668410,2668473-2668562,2668672-2668787,
           2668999-2671924
          Length = 1170

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = +1

Query: 421 ESNKALL*HNITNL*VSNDI*EIP*TLHTICHLYIQFFHDIRLREING*NFHPHRLLSMI 600
           E++K LL  N+ +L +SND+ EIP      C   +  F++   + IN   F   + + ++
Sbjct: 504 ENSKTLL--NLRHLVISNDVKEIPAIEELKCLRSLLIFNNKNFKTINKDIFRELKHIRVL 561

Query: 601 ILN 609
           +L+
Sbjct: 562 VLS 564


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,992,560
Number of Sequences: 37544
Number of extensions: 333625
Number of successful extensions: 799
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)