Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a06
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical...    30   1.9  
Z75536-1|CAE17805.1|  195|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U70852-10|AAO91718.1|  505|Caenorhabditis elegans Hypothetical p...    28   5.9  
U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical pr...    28   5.9  
X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    28   7.8  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    28   7.8  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    28   7.8  
AC024880-6|AAF60912.1|  547|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1053.2 protein.
          Length = 536

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +2

Query: 299 GEAVSSAYYSESLELPVAEQPSPSSAYNAESFEQSV 406
           GEAV S+    SL LPV E   PSS    +SF Q++
Sbjct: 92  GEAVKSSQLPSSLYLPVKESSKPSS-NPCDSFRQAI 126


>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
           protein W06A7.3f protein.
          Length = 2488

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 173 DGADTVVSDSETAAASNFLASVNSLTDDN--DIMECLLKTTDNLGEAVSSAYYSESLE-- 340
           D  D    D  T+  S  +       DDN  + +E  L+TT+  G+A   +Y   ++E  
Sbjct: 760 DPTDPETVDETTSKISENMPKAPDTEDDNATEFIEAGLETTEAFGDAEHVSYLDANIEKL 819

Query: 341 LPVAEQPSP 367
           + +A++P P
Sbjct: 820 VAMADEPLP 828


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
           protein W06A7.3c protein.
          Length = 2484

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 173 DGADTVVSDSETAAASNFLASVNSLTDDN--DIMECLLKTTDNLGEAVSSAYYSESLE-- 340
           D  D    D  T+  S  +       DDN  + +E  L+TT+  G+A   +Y   ++E  
Sbjct: 760 DPTDPETVDETTSKISENMPKAPDTEDDNATEFIEAGLETTEAFGDAEHVSYLDANIEKL 819

Query: 341 LPVAEQPSP 367
           + +A++P P
Sbjct: 820 VAMADEPLP 828


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
           protein W06A7.3a protein.
          Length = 2607

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 173 DGADTVVSDSETAAASNFLASVNSLTDDN--DIMECLLKTTDNLGEAVSSAYYSESLE-- 340
           D  D    D  T+  S  +       DDN  + +E  L+TT+  G+A   +Y   ++E  
Sbjct: 760 DPTDPETVDETTSKISENMPKAPDTEDDNATEFIEAGLETTEAFGDAEHVSYLDANIEKL 819

Query: 341 LPVAEQPSP 367
           + +A++P P
Sbjct: 820 VAMADEPLP 828


>AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.18 protein.
          Length = 921

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 448 GRILGRFTKCGGPI*QE*IEA*IQEKHNSKLCN 546
           GRIL + TKCG P+ +E I A  Q K ++K+ N
Sbjct: 189 GRILAQITKCGNPVTKE-ILARCQVKWDTKIKN 220


>Z75536-1|CAE17805.1|  195|Caenorhabditis elegans Hypothetical
           protein F18C12.4 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 587 VASTQEITHYFTNDFAPYLMRFDDNDY 667
           V+++Q+++  F  DF P L    DNDY
Sbjct: 145 VSTSQKLSETFERDFDPVLEGMSDNDY 171


>U70852-10|AAO91718.1|  505|Caenorhabditis elegans Hypothetical
           protein F45E4.7b protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 713 CNNQSRTYGRRTC 675
           CNN SR Y RRTC
Sbjct: 492 CNNSSRLYNRRTC 504


>U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical
           protein F45E4.7c protein.
          Length = 784

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 713 CNNQSRTYGRRTC 675
           CNN SR Y RRTC
Sbjct: 771 CNNSSRLYNRRTC 783


>U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical
           protein F45E4.7a protein.
          Length = 868

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 713 CNNQSRTYGRRTC 675
           CNN SR Y RRTC
Sbjct: 855 CNNSSRLYNRRTC 867


>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 2   GGDTIVNNQTTMTQINFNASYTSAPTPSRASF 97
           GG T V +QTT T  + N SY++ P  SR  +
Sbjct: 418 GGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 448


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform a protein.
          Length = 1128

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 2    GGDTIVNNQTTMTQINFNASYTSAPTPSRASF 97
            GG T V +QTT T  + N SY++ P  SR  +
Sbjct: 1044 GGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 1074


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform b protein.
          Length = 1248

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 2    GGDTIVNNQTTMTQINFNASYTSAPTPSRASF 97
            GG T V +QTT T  + N SY++ P  SR  +
Sbjct: 1044 GGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 1074


>AC024880-6|AAF60912.1|  547|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.4 protein.
          Length = 547

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 107 YSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKT 286
           YSE  D +   + ++  ++      +    D  T + S   ASVN   +DND+   L+  
Sbjct: 455 YSEAFDDKDEQEVIDLDDDDDEPDPNIQQPDDHTESTSKECASVNVKYEDNDVKLSLVSN 514

Query: 287 TDN 295
            D+
Sbjct: 515 GDD 517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,548,230
Number of Sequences: 27780
Number of extensions: 320781
Number of successful extensions: 1134
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)