Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a04
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine re...    29   4.6  
AF038611-5|AAT27250.1|  760|Caenorhabditis elegans Homolog of el...    28   6.0  
AF038611-4|AAB92042.3|  833|Caenorhabditis elegans Homolog of el...    28   6.0  

>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 249  VTAAPPVNTNKPPFSQTTASKQSLINANFA 160
            +  +PP NT KPP   TTA++ + + A  A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 249  VTAAPPVNTNKPPFSQTTASKQSLINANFA 160
            +  +PP NT KPP   TTA++ + + A  A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141


>AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine
           receptor, class w protein8 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 621 VVILTQLSVYSSTPYALVISICSANLTKSNSSLYCVFM 508
           +VILT+  + ++  Y ++I IC   LT+S +++   FM
Sbjct: 61  MVILTRKELRTNLVYIVMIGICICELTQSFTTILSYFM 98


>AF038611-5|AAT27250.1|  760|Caenorhabditis elegans Homolog of elac2
           (cancer susceptibilitylocus) protein 1, isoform b
           protein.
          Length = 760

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +2

Query: 461 RLNGQIDLHLNRHIKCIKTQYNDEFDLVRFALQIDITSAYGVDEYTDNCVKITTAPLS 634
           RL+G   +++   ++CI+   + ++   ++  Q++    Y ++ Y D  +K+T  PLS
Sbjct: 104 RLHGA--MNIKHFLECIRPFQDSDYGSCKYPSQVE-ERPYTMENYEDAGLKVTYIPLS 158


>AF038611-4|AAB92042.3|  833|Caenorhabditis elegans Homolog of elac2
           (cancer susceptibilitylocus) protein 1, isoform a
           protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +2

Query: 461 RLNGQIDLHLNRHIKCIKTQYNDEFDLVRFALQIDITSAYGVDEYTDNCVKITTAPLS 634
           RL+G   +++   ++CI+   + ++   ++  Q++    Y ++ Y D  +K+T  PLS
Sbjct: 177 RLHGA--MNIKHFLECIRPFQDSDYGSCKYPSQVE-ERPYTMENYEDAGLKVTYIPLS 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,899,116
Number of Sequences: 27780
Number of extensions: 329049
Number of successful extensions: 1039
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)