Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a04
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.2  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 553 CKSNQIKLIVVLCFYAFYMAV*VQIDL 473
           C +N I  I++L +  FY+ V ++IDL
Sbjct: 109 CWTN-IYYIIILAWALFYLLVSLRIDL 134


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 553 CKSNQIKLIVVLCFYAFYMAV*VQIDL 473
           C +N I  I++L +  FY+ V ++IDL
Sbjct: 162 CWTN-IYYIIILAWALFYLLVSLRIDL 187


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 182 DCFEAVVCENGGLFVLTGGAAV 247
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 182 DCFEAVVCENGGLFVLTGGAAV 247
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 182 DCFEAVVCENGGLFVLTGGAAV 247
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 476 IDLHLNRHIKCIKTQYNDEFD 538
           +D+ L+  I C+ + +  EFD
Sbjct: 59  LDVRLDYRISCLLSIFKQEFD 79


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 476 IDLHLNRHIKCIKTQYNDEFD 538
           +D+ L+  I C+ + +  EFD
Sbjct: 27  LDVRLDYRISCLLSIFKQEFD 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,078
Number of Sequences: 438
Number of extensions: 3227
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)