Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20a03
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098 139 2e-33
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087... 133 1e-31
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 31 1.2
04_04_0360 - 24684159-24684565,24684654-24685089 29 2.7
03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184 29 4.8
01_01_0456 - 3385907-3386174,3386283-3386470,3386542-3387027,338... 28 6.3
04_01_0377 - 4970034-4970687 28 8.4
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 28 8.4
>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
Length = 221
Score = 139 bits (336), Expect = 2e-33
Identities = 73/149 (48%), Positives = 99/149 (66%)
Frame = +1
Query: 259 SKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEA 438
SKQSR EKK+RK M KLG+KPV GV R+TI+++KNILFV++ PDV+K+P S+TY++FGEA
Sbjct: 75 SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134
Query: 439 KIEDLSTQATMAAAERFKAPETTATGNDASTTGTTVAPIAXXXXXXXXXXXXXXXXXXXI 618
KIEDLS+Q AA++F+ + + + A A +
Sbjct: 135 KIEDLSSQLQAQAAQQFRMQDLSKV-----MSKPDAAAAAPADEEEEVDETGIEPRDIDL 189
Query: 619 VMSQANVSRAKAVRALKNNQSDIVNAIME 705
VM+QA+VSRAKAV+ALK + DIV+AIME
Sbjct: 190 VMTQASVSRAKAVKALKAHDGDIVSAIME 218
>01_07_0123 +
41206782-41206844,41207701-41207782,41208587-41208717,
41208758-41209147
Length = 221
Score = 133 bits (321), Expect = 1e-31
Identities = 83/176 (47%), Positives = 102/176 (57%), Gaps = 19/176 (10%)
Frame = +1
Query: 235 AGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKN----------------- 363
AG D +SKQSR EKK+RK M KLG+K + GV RVTI+KSKN
Sbjct: 50 AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109
Query: 364 --ILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERFKAPETTATGNDASTTG 537
ILFVI+ PDV+K+P+SDTY++FGEAKIEDLS+Q AAE+FKAP D S
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFKAP-------DLSNVI 162
Query: 538 TTVAPIAXXXXXXXXXXXXXXXXXXXIVMSQANVSRAKAVRALKNNQSDIVNAIME 705
+ P A +VM+QA VSR++AV+ALK DIV AIME
Sbjct: 163 SKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRSRAVKALKAANGDIVTAIME 218
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 410 QTPTLFLVKPRLKICPHRPPWLQQRDSRHQRPQPLA 517
Q P ++ +L P +PP LQ + HQ+PQP A
Sbjct: 244 QQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQPQPQA 279
>04_04_0360 - 24684159-24684565,24684654-24685089
Length = 280
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 537 SSCGSVIASGCGLWCLESLCCSHGGLCG 454
S+ G A CG C ++CCS G CG
Sbjct: 14 SATGQASAQNCG--CQSNMCCSKWGYCG 39
>03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184
Length = 259
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = +1
Query: 208 DAGGITNPIAGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSP 387
D G P+ D+ + Q RG+ I+ L LKP E + S + + S
Sbjct: 134 DLGEFVLPLFEEDVDIEDVQQRGQPDIPVIVQALTLKPFVQWEETSQSPSAEVNMAMTSL 193
Query: 388 DVYKN--PHSDTYIVFGEAKIEDLSTQATMAAAERFKAPE 501
D ++N D I + K+E + TM ++ +A E
Sbjct: 194 D-FENMLADRDRRIQYWRTKLEVAELKKTMVEVKKDQAVE 232
>01_01_0456 -
3385907-3386174,3386283-3386470,3386542-3387027,
3387123-3387184,3387269-3387429,3388215-3388290,
3388382-3388471,3388591-3388659,3389498-3389756
Length = 552
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -3
Query: 630 LGHYYLHVLLINSSLVYSXXXXXFCYWCYRRSSCGSVIASGCGLWCLESLCCSH 469
+G YLH N +V S RS S LW ++SLCC+H
Sbjct: 362 IGEGYLHEKR-NEYIVRSIICRKEEQQAITRSMLSSTAIDEKNLWVVDSLCCNH 414
>04_01_0377 - 4970034-4970687
Length = 217
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -3
Query: 549 CYRRSSCGSVIASGCGLWCLESLCCSHGGLCG 454
C CGS G G C + CCS G CG
Sbjct: 58 CCSSQRCGS---QGGGATCSNNQCCSQYGYCG 86
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 166 SHCQMMQSLLCASRS*RRWPCQVQSVLAS 80
S C +QSL+ ++ +RWP V S LAS
Sbjct: 422 SLCSSLQSLILSNNKIKRWPGTVFSSLAS 450
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.127 0.338
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,337,839
Number of Sequences: 37544
Number of extensions: 305012
Number of successful extensions: 644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -