Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20a02
         (235 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna...    29   0.58 
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    26   4.1  
Z68134-1|CAA92226.2|  492|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm (myotubu...    25   5.4  
Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid...    25   9.5  
U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell m...    25   9.5  
U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell m...    25   9.5  
AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance prot...    25   9.5  

>U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein2 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 62  EQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 184
           E+F   ++E F    K V     NW+ND   +L + + +++
Sbjct: 131 EEFRAKVYETFVAMEKAVTGEQENWKNDEHMMLWQQIKDIS 171


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 229 FST*FVLIYNFNSNEI*VVQMF 164
           FST ++LIYNF +N +  ++ F
Sbjct: 23  FSTMYILIYNFTTNVLKAMRYF 44


>Z68134-1|CAA92226.2|  492|Caenorhabditis elegans Hypothetical
           protein T27A8.1 protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 125 PVNWENDNLSVLLKHLHNLN 184
           P+N+ + N S L  H+HNL+
Sbjct: 53  PLNFSHMNYSTLTDHIHNLH 72


>U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical
           protein F45F2.5 protein.
          Length = 556

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = +2

Query: 53  NYCEQFITAIFEIFTLSSKIVVAVPVNWENDNL 151
           N+C   +TAI+ +  +    V+ +   W ++ +
Sbjct: 33  NFCVNLMTAIYTLILIMVAFVIEISPTWRSEKM 65


>AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm
           (myotubularin) family protein 1 protein.
          Length = 588

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +2

Query: 2   KTYVNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWE 139
           K Y   +DES + ++V +  E  + A+F + T    +++     W+
Sbjct: 338 KGYYKALDESKWLNHVQSILEGAVKAVFNVDTEKQSVLIHCSDGWD 383


>Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical
           protein C10C5.4 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 136 PIDGHGHNDFTAERKNFENGRDKLFAIVNNV 44
           P+  H HN+F  E K F  G +    ++NN+
Sbjct: 365 PVRAHAHNEFLNE-KVFLRGVEIFETLINNL 394


>U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid
           phosphatase protein1 protein.
          Length = 449

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 2   KTYVNLVDESAFGSNVINYCEQ 67
           K++VN  D  A   N+ NYC Q
Sbjct: 184 KSFVNSADVQAVLGNLTNYCGQ 205


>U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform b protein.
          Length = 356

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 177 LCKCFKSTLKLSFSQLTGTATT 112
           LCKC KST+ +  +    T TT
Sbjct: 255 LCKCLKSTIPIKGASSHTTTTT 276


>U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform a protein.
          Length = 362

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 177 LCKCFKSTLKLSFSQLTGTATT 112
           LCKC KST+ +  +    T TT
Sbjct: 261 LCKCLKSTIPIKGASSHTTTTT 282


>AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance protein
           MIG-13 protein.
          Length = 362

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 177 LCKCFKSTLKLSFSQLTGTATT 112
           LCKC KST+ +  +    T TT
Sbjct: 261 LCKCLKSTIPIKGASSHTTTTT 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,537,641
Number of Sequences: 27780
Number of extensions: 93968
Number of successful extensions: 250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)