Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1p11
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch...    84   2e-17
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    38   0.001
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    36   0.005
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    31   0.26 
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    29   0.59 
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    29   0.59 
SPBC1709.09 |||mitochondrial translation termination factor|Schi...    26   5.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.5  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.6  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   9.6  

>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
           Tim10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 33/73 (45%), Positives = 53/73 (72%)
 Frame = +2

Query: 287 LDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDV 466
           ++P  + + ++ E+EMMSD++NRLV  CH+KCI  KY+E +L KGESVC+DRCV+KY + 
Sbjct: 13  INPQNIAMAEQ-EVEMMSDIFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEA 71

Query: 467 HERIGKKLSNMSQ 505
           ++ + + +    Q
Sbjct: 72  NQSLSQHMQKRGQ 84


>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/66 (24%), Positives = 35/66 (53%)
 Frame = +2

Query: 305 QLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGK 484
           Q+++  +++   +MY+ L   C   C+   +   +L   ES C+ +C  K+L   ER+G+
Sbjct: 14  QVLEAKQLKEYLNMYSTLTQNCFSDCVQ-DFTSSKLSNKESECIAKCADKFLKHSERVGQ 72

Query: 485 KLSNMS 502
           + +  +
Sbjct: 73  RFAEFN 78


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +2

Query: 305 QLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEP--ELGKGESVCLDRCVAKYLDVHERI 478
           Q+ QEL +    ++ +++   C  KCIP    EP       E  C+ +C+ +Y+D    +
Sbjct: 24  QIRQELAVAQAGELISKINENCFDKCIP----EPGSTFDPNEKSCVSKCMERYMDAWNIV 79

Query: 479 GKKLSNMSQGETEDL 523
            +   +  Q E ++L
Sbjct: 80  SRTYISRMQREQKNL 94


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = +2

Query: 284 QLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLD 463
           QL+ +K    ++ ++++   ++ +  S C  KCI    ++  L K E  CL  CV ++LD
Sbjct: 17  QLELSKFIESEQQKVKLQQAIH-QFTSTCWPKCIGNIGNK--LDKSEEQCLQNCVERFLD 73

Query: 464 VHERIGKK 487
            +  I K+
Sbjct: 74  CNFHIIKR 81


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = -3

Query: 250  CSMVYLENYNEFKFTISDTSQGI 182
            C+++YL+ Y ++ F+ISD+S+ I
Sbjct: 1507 CNLIYLKRYIKYAFSISDSSRPI 1529


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 18/79 (22%), Positives = 36/79 (45%)
 Frame = +2

Query: 278 VPQLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKY 457
           +P ++  ++ ++  ++   +SDM    V A     IP++Y +P L  G+  C    +  Y
Sbjct: 78  LPTINMGRMTMLDAIKSNYISDMSKADVDAVFDSIIPLRYQQPTLLLGK--CSGLTITAY 135

Query: 458 LDVHERIGKKLSNMSQGET 514
              H   G   S + + E+
Sbjct: 136 NAGHTLGGTLWSLIKESES 154


>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +2

Query: 398 HEPELGKGESVCLDRCVAKYLDVHERIGKKLSNM----SQGETEDLTKVNIPDK 547
           H+PE     +  L    AK   VHE++ K+        SQG    L  + IP K
Sbjct: 47  HDPEFANSFNKMLKSFEAKMQLVHEKLAKRFQEAVVLPSQGNFTQLEALFIPSK 100


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 101 WWRRTTLILSVLRI*KQENACEDLIKENTLTCIGNCE 211
           +W RT + L +L +     ACE ++K+  L  +   E
Sbjct: 226 FWERTYMFLELLPLQSITAACESILKDYLLNLVKTSE 262


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 546 LSGMLTFVRSSVSPCDILESFLPMRSCTSKYLATQRSKHTDSPF 415
           L    T+  S +     LESF+ M    SK       +H+DS F
Sbjct: 167 LQSNTTYTNSDLPASKQLESFISMNLSYSKVFFLHLLQHSDSSF 210


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +2

Query: 122 ILSVLRI*KQ--ENACEDLIKENTLTCI 199
           ++S  RI K   EN+CE +IKEN+L+ +
Sbjct: 730 LMSFTRILKAHLENSCEYVIKENSLSLL 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,945
Number of Sequences: 5004
Number of extensions: 68411
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)