Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1p11
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-17|CAC70139.1|   86|Caenorhabditis elegans Hypothetical...   108   4e-24
AF150094-1|AAD40000.1|   86|Caenorhabditis elegans small zinc fi...   108   4e-24
Z96047-1|CAB09410.1|  108|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U40952-11|AAA81744.2|  280|Caenorhabditis elegans Hypothetical p...    29   3.0  
AF144704-1|AAD39955.1|  108|Caenorhabditis elegans small zinc fi...    29   3.0  
AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical ...    28   6.9  
U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine rece...    28   9.1  

>AL161712-17|CAC70139.1|   86|Caenorhabditis elegans Hypothetical
           protein Y66D12A.22 protein.
          Length = 86

 Score =  108 bits (260), Expect = 4e-24
 Identities = 47/79 (59%), Positives = 62/79 (78%)
 Frame = +2

Query: 296 AKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHER 475
           A++  V ELE+EMMSDMY R+ ++C  KCI   + E EL KGE+VCLDRCVAKYLDVHE+
Sbjct: 5   AQMAQVAELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEK 64

Query: 476 IGKKLSNMSQGETEDLTKV 532
           +GK+L++MSQG+   L K+
Sbjct: 65  LGKRLTSMSQGDEAALQKI 83


>AF150094-1|AAD40000.1|   86|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 86

 Score =  108 bits (260), Expect = 4e-24
 Identities = 47/79 (59%), Positives = 62/79 (78%)
 Frame = +2

Query: 296 AKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHER 475
           A++  V ELE+EMMSDMY R+ ++C  KCI   + E EL KGE+VCLDRCVAKYLDVHE+
Sbjct: 5   AQMAQVAELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEK 64

Query: 476 IGKKLSNMSQGETEDLTKV 532
           +GK+L++MSQG+   L K+
Sbjct: 65  LGKRLTSMSQGDEAALQKI 83


>Z96047-1|CAB09410.1|  108|Caenorhabditis elegans Hypothetical
           protein DY3.1 protein.
          Length = 108

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/81 (20%), Positives = 33/81 (40%)
 Frame = +2

Query: 269 KMAVPQLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCV 448
           K++  Q +     + Q+  +    ++   +   C  KCI        L  GE  CL RC+
Sbjct: 12  KLSPEQQEQVISGVKQQAALANAQNLVTDISEKCTNKCITAP--GSSLASGEKQCLQRCM 69

Query: 449 AKYLDVHERIGKKLSNMSQGE 511
            ++++    + + L    Q E
Sbjct: 70  DRFMESWNLVSQTLQKRLQEE 90


>U40952-11|AAA81744.2|  280|Caenorhabditis elegans Hypothetical
           protein C03B1.2 protein.
          Length = 280

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 735 CFLIVKYLHNGRINI---IYRKTTSPIYYCKFFTTKYLKY 625
           C  +++   NGRI +   +Y++T++PIY  K    K+L +
Sbjct: 208 CLDLMQQAVNGRIEVYQEVYKQTSNPIYLAKAVFIKFLDF 247


>AF144704-1|AAD39955.1|  108|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 108

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/81 (20%), Positives = 33/81 (40%)
 Frame = +2

Query: 269 KMAVPQLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCV 448
           K++  Q +     + Q+  +    ++   +   C  KCI        L  GE  CL RC+
Sbjct: 12  KLSPEQQEQVISGVKQQAALANAQNLVTDISEKCTNKCITAP--GSSLASGEKQCLQRCM 69

Query: 449 AKYLDVHERIGKKLSNMSQGE 511
            ++++    + + L    Q E
Sbjct: 70  DRFMESWNLVSQTLQKRLQEE 90


>AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical
           protein F37C4.3 protein.
          Length = 685

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 290 DPAKL--QLVQELEIEMMSDMYNRLVSACHRKCIPIKY 397
           DP  L  QLV   E EM    Y +L   C+ KC+ + Y
Sbjct: 600 DPVILDKQLVDFSEYEMARKRYAQLFQDCNEKCVRVDY 637


>U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 31 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -1

Query: 783 MYINTMSIHGLYFLTYCFLIVKYLHNGRINIIYRKTTSPIYYCKFFTTKYLKYADVLYWS 604
           +Y+   SI  L F+ +C  I   +H      IY    +  Y   F +   +    ++YWS
Sbjct: 113 LYVRQPSIKKLVFVAFCLSIPSIIHMVVWFSIYDPNEASTYLPLFGSCDMVLSGKIVYWS 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,134,503
Number of Sequences: 27780
Number of extensions: 380691
Number of successful extensions: 980
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)