Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1p11
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 685 IYNINSAIM*VLHYEKTIC*KI*PMYRHGVYVHR 786
           ++++ S  +  LHYE   C +  P  +  +Y+HR
Sbjct: 702 LHSVVSGALDRLHYETDPCVRYYPRRKEWLYLHR 735


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 749 YSPCIDMVFMY 781
           Y PCI MVF+Y
Sbjct: 353 YIPCIIMVFLY 363


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 258 LSNVQWYIWKIIMNS 214
           LS+  W+ W +++NS
Sbjct: 610 LSSAVWFAWGVLLNS 624


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 164 EDLIKENTLTC 196
           + L+KENT+TC
Sbjct: 380 QSLLKENTVTC 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,408
Number of Sequences: 438
Number of extensions: 5073
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)