Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1p07
         (134 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical
           protein C08B6.6 protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 59  PVDAHCRCNTHQSLHHYEG 3
           P+   CRCNT  +LH  EG
Sbjct: 98  PIYVLCRCNTTNTLHRREG 116


>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 133 FFFNVYVQHFIADFCLYYI 77
           FFF +Y Q F+ ++ +Y++
Sbjct: 240 FFFQIYGQLFLDEYLIYHV 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,428
Number of Sequences: 27780
Number of extensions: 40274
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 12,740,198
effective HSP length: 25
effective length of database: 12,045,698
effective search space used: 228868262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)