Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1o23
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 29 0.95
SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.3
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 1.7
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 2.9
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 26 5.0
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.7
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 26 6.7
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 8.8
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual 25 8.8
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 28.7 bits (61), Expect = 0.95
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = +2
Query: 155 GNSDTVQFSTIASLHGINMFTKCHNLTMLNTLVDNGKILWKEYCKSVTLIGIATGGLECD 334
G +T+ S + GI + T C T + +++D GK + + S+ +IG+ TGG++ +
Sbjct: 156 GRYNTIVCSAVIYFIGILILT-C---TAIPSVIDAGKSMGG-FVVSLIIIGLGTGGIKSN 210
Query: 335 LELLLA 352
+ L+A
Sbjct: 211 VSPLMA 216
>SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 116
Score = 28.3 bits (60), Expect = 1.3
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +2
Query: 119 TDSGVPIFSRKRGNSDTVQFSTIASLHG-----INMFTKCHNLTMLNTLVDNGKILWKEY 283
T+S +FS K +SDT Q I L ++ KC LN +++ + KE+
Sbjct: 2 TNSDDDLFSEKSTSSDTQQVQNILELEAKIPDILSSAGKCIEAIQLNNSLEDFRKYSKEF 61
Query: 284 CKSVTLIGIATGGLECDLELLLASI 358
++V I+TG LEL A +
Sbjct: 62 LETVEF--ISTGLRRQALELEKAEV 84
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -2
Query: 327 SKPPVAIPMS-VTLLQYSFHNILPLSTSVFN-IVKLWHLVNML 205
S PP ++ +TLL +FHN++P S+S + + H+ ++L
Sbjct: 117 SSPPCTSALTEITLLPPTFHNLIPSSSSYETAVAEFLHMEDLL 159
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 307 NSNWWLRMRFRTSLGIYT*CHD 372
N NW+ ++ T+ I+T CHD
Sbjct: 572 NGNWYNGVKHETATDIFTTCHD 593
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 641 WLLDVHVY*GMPIS 600
W+LD+HV+ G PIS
Sbjct: 54 WVLDIHVHEGYPIS 67
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 345 RSSKSHSKPPVAIPMSVTLLQYSFHNILPLSTSVFNIVKL 226
R+ K H PP+ +P V + LPL N+V L
Sbjct: 303 RALKQHKLPPIPVP-EVQTTNIGYQTDLPLQNPNDNLVSL 341
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 431 DLRQCYPLIDYLLESLDPNAISSPLPTLVLELVQSFLCP 547
D+ + P + LL L + + PLP V+ L+Q L P
Sbjct: 649 DVTEFIPYVLQLLSQLVEASGNEPLPDFVVNLIQPCLSP 687
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -2
Query: 264 LPLSTSVFNIVKLWHLVNMLIPCNDAIVENCTVSLLPLFLENIGTPLSVAMAITTTDIF 88
LPL + + L L L+ DAI EN + LL L+ P+ A ++F
Sbjct: 832 LPLDRKISALGLLRLLTCDLVLAPDAIYENLIIPLLTCILKLFEMPIEQAQTDADEELF 890
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 8.8
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = -3
Query: 698 PVTA*VVLLLGSAHQNLNLWLLDVHVY*GMPISQLHFLHSGLVLAAIVELVDTKSSV--- 528
P+ A + S + ++L L V + P+S L F H+G LA DT V
Sbjct: 447 PILAVASNSIVSMYNAISLQQLAVFMRHTAPVSALSFSHNGRYLAT----GDTSGGVCIW 502
Query: 527 QAQVLKLVMDLKLHSDLGIPTNNLLKDSTVLNLFW-FDQHFLM 402
+ KL +L + I N+L + V L W FD L+
Sbjct: 503 SCKTAKLFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLL 545
>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 346 LGIYT*CHDILHWKEGTRNI 405
LG+ T CH I+ WK ++ I
Sbjct: 79 LGVQTNCHSIVPWKSSSKLI 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,546
Number of Sequences: 5004
Number of extensions: 65192
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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