Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1o23
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    31   1.3  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    30   1.7  
03_05_0187 - 21751374-21752631,21752958-21753399,21753914-21753962     29   5.3  
01_05_0634 + 23843152-23843272,23843441-23843628,23843876-238442...    28   7.0  
06_01_0598 + 4324129-4326150                                           28   9.2  
04_03_0950 - 21049767-21050450                                         28   9.2  

>09_04_0308 +
           16567361-16568854,16568946-16569068,16569372-16569649,
           16570316-16571924,16572363-16573781
          Length = 1640

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 478 RSECNFKSITNFST*ACTELFVS-TSSTIAASTRPLCRKCNW--EMGMP*YTWTSSSH 642
           R   +F+  TN    A T +F S +SST   S  P+  KC+W        YT TS+SH
Sbjct: 631 RRRKSFEETTNIIK-ATTSIFNSASSSTPPTSPTPVLAKCSWACSNSASAYTTTSASH 687


>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
            16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 490  NFKSITNFST*ACTELFVS-TSSTIAASTRPLCRKCNW--EMGMP*YTWTSSSH 642
            +F+  TN    A T +F S +SST   S  P+  KC+W        YT TS+SH
Sbjct: 1068 SFEETTNIIK-ATTSIFNSASSSTPPTSPTPVLAKCSWACSNSASAYTTTSASH 1120


>03_05_0187 - 21751374-21752631,21752958-21753399,21753914-21753962
          Length = 582

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 723 RGAPSWEAASNSISRASLGFSSSKSELVATRCPC--ILRHAHL 601
           RG+ S   A + +S    GF    S LVAT  PC    RHAHL
Sbjct: 247 RGS-SRATAESVLSSVLSGFFQEVSSLVATGSPCTDTTRHAHL 288


>01_05_0634 +
           23843152-23843272,23843441-23843628,23843876-23844205,
           23844319-23844565,23844591-23844668,23844740-23845024,
           23845139-23845225,23845365-23845415,23845625-23845761,
           23845853-23846437
          Length = 702

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 203 YHVMMLLLKIVQCHCCLFF*K 141
           +H +++++ IV C CC+F+ K
Sbjct: 473 FHFIVIVIAIVNCFCCIFWRK 493


>06_01_0598 + 4324129-4326150
          Length = 673

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 203 INMFTKCHNLT----MLNTLVDNGKILWKEYCKSVTLIGIATGGLECDLELLLASIH 361
           +N+++KC +L     + N + D   + W        + G + G ++   E+L  +IH
Sbjct: 467 LNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIH 523


>04_03_0950 - 21049767-21050450
          Length = 227

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 269 LWKEYCKSVTLIGIATGGLECDLELLLASIHDVMIFCI 382
           +WK++C  +T   +  GG +     +L S+ DV  +C+
Sbjct: 99  MWKKFCHDITAYVVVGGGTQ-----ILISVEDVGTYCM 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,295,663
Number of Sequences: 37544
Number of extensions: 383377
Number of successful extensions: 994
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)