Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1o21
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    43   3e-05
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    27   1.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   4.0  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   5.2  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   6.9  
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    25   6.9  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   9.1  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   9.1  

>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
 Frame = +2

Query: 464 LPTVFKWEGGGKQVFISGTFTDW-KTIPMVKSHGDFVTIIDLPEG 595
           +PT+ +W GGG+ V+++G+F+ W K I ++KS  D+  ++ L  G
Sbjct: 99  VPTIIRWRGGGEVVYVTGSFSRWKKKIQLLKSE-DYTVLLQLRPG 142


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 521 FTDWKTIPMVKSHGDFVTIIDLPEGEHQ 604
           F+DW TIP +  +G+FV   D+    H+
Sbjct: 89  FSDWPTIPQLYINGEFVGGSDILASMHK 116


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 216 CHSLGWLLPAFPI*FSTKKILKNCICNLIPNI 121
           C S  WL+  F    + +   KN I  L+PNI
Sbjct: 600 CFSSEWLIKCFEDMIANESASKNEIMKLVPNI 631


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 526 RLENYSHGKITW*FCYNNRFTRR*TSGTNILLMENGG 636
           +L+N    +  W F  +N F R  T+ TN+  ++ GG
Sbjct: 570 KLKNGKENQWVWGFHASNFFLRDETNETNVFFIDCGG 606


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 495 PPPSHLKTVGNTLISSTILLPSVRVFDLSRC 403
           PP S+ +T+ +TL++ ++ L  + +  L RC
Sbjct: 191 PPESYFRTIKSTLLAISMFLGFITLTWLLRC 221


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 521 FTDWKTIPMVKSHGDFVTIIDL 586
           F+DW T P +   G+FV  +D+
Sbjct: 207 FSDWPTFPQLYIKGEFVGGLDI 228


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 185 NAGSNQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFDK 298
           + G    K + K ANKS D+D    +P  EG +F +++
Sbjct: 213 SVGGGGRKLFRKVANKSSDYDPDLCAPRTEG-SFIYEE 249


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 171 KIKWGMPEVTNPKNG 215
           KI W +P+  NPK+G
Sbjct: 404 KISWALPKPRNPKHG 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,596
Number of Sequences: 5004
Number of extensions: 52813
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)