Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1o21
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930... 40 0.001
04_03_0807 - 19860041-19860132,19860248-19860347,19861101-198611... 40 0.001
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 40 0.001
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500... 39 0.003
03_02_0815 + 11477618-11477845,11478206-11478337,11480227-114804... 39 0.004
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 30 1.8
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 28 7.1
04_03_0963 + 21285160-21285579,21286585-21286635,21287017-212875... 28 7.1
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 7.1
>05_05_0310 -
23991461-23991652,23991780-23991965,23992813-23993094,
23993220-23993382,23993477-23993661,23994154-23994205,
23994292-23994392,23995244-23995417
Length = 444
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 458 KVLPTVFKWEGGGKQVFISGTFTDWKTIPMVKSHG-DFVTIIDLPEGEHQVQI 613
K +PT+ W GG +VF+ G++ +W + +++ G D ++ LP G + +I
Sbjct: 144 KGIPTLISWSQGGNEVFVEGSWDNWTSRRVLEKSGKDHTILLVLPSGVYHYRI 196
>04_03_0807 -
19860041-19860132,19860248-19860347,19861101-19861170,
19861344-19861407,19862531-19862704,19862805-19862946,
19863413-19863544,19863616-19863705,19864093-19864152,
19864227-19864343,19864441-19864611,19866909-19866984,
19867156-19867223
Length = 451
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 476 FKWEGGGKQVFISGTFTDWKTIPMVKSHGDFVTIIDLPEGEHQ 604
F W GG++ G+FT W+ PM +F + DLP G +Q
Sbjct: 6 FAWPYGGQRASFCGSFTGWRECPMGLVGAEFQVVFDLPPGVYQ 48
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +2
Query: 464 LPTVFKWEGGGKQVFISGTFTDW-KTIPMVKSHG---DFVTIIDLPEGEHQVQIFC 619
+PT F W GGK+V+++G+FT W + +PM G F I L G HQ + FC
Sbjct: 59 VPTRFVWPYGGKRVYLTGSFTRWTEHLPMSPVEGCPTVFQAICSLSPGIHQYK-FC 113
>07_03_1739 -
29148685-29149017,29149564-29149726,29149844-29150028,
29150708-29150977
Length = 316
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 458 KVLPTVFKWEGGGKQVFISGTFTDWKTIPMVKSHG-DFVTIIDLPEGEHQ 604
K++PT+ W GGK V+I G++ +WK+ +V G D ++ L G ++
Sbjct: 125 KLIPTLLVWTLGGKNVYIEGSWDNWKSKQLVHKCGKDHCVMLGLASGVYR 174
>03_02_0815 +
11477618-11477845,11478206-11478337,11480227-11480408,
11480500-11480662,11481480-11481794
Length = 339
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 458 KVLPTVFKWEGGGKQVFISGTFTDWKT-IPMVKSHGDFVTIIDLPEGEHQ 604
K +P + W GGK V + G++ +WK+ PM KS D ++ LP G ++
Sbjct: 154 KEIPVLIVWTLGGKNVSVEGSWDNWKSRKPMQKSGKDHSLLLILPSGVYR 203
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 527 DWKTIP--MVK-SHGDFVTIIDLPEGEHQVQIF 616
+WK P +VK +H DF T + EGEHQ +F
Sbjct: 92 EWKDFPKQIVKLAHSDFRTKKTITEGEHQTHLF 124
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 197 NQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFD 295
N ++WH +N+ + + GP P G T+D
Sbjct: 526 NSVQQWHHRSNQQMEMEPGPMLPGGLGLGLTYD 558
>04_03_0963 +
21285160-21285579,21286585-21286635,21287017-21287502,
21287866-21287961
Length = 350
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +2
Query: 347 DGAPYYTKAVPESDIEYTEQRERSNTLTDGSKIVD---DIKVL-PTVF----KWEGGGKQ 502
D +PY+T V +++ + + E+SN+ + K V+ +KV PT+F K EG GK
Sbjct: 13 DESPYHTAVVTTNNLVRSIKAEKSNSSSSSGKPVETDIGLKVASPTMFGFNTKIEGTGKN 72
Query: 503 VFI 511
+ +
Sbjct: 73 MAV 75
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/71 (33%), Positives = 31/71 (43%)
Frame = +2
Query: 362 YTKAVPESDIEYTEQRERSNTLTDGSKIVDDIKVLPTVFKWEGGGKQVFISGTFTDWKTI 541
YTK P I Y ++ L S DDI +L T+ G V TFT +I
Sbjct: 4991 YTKKCPPDIILYVDR------LDSWSNHFDDIPLLKTITTILGTSIWVNTVVTFTHANSI 5044
Query: 542 PMVKSHGDFVT 574
P S+GD +T
Sbjct: 5045 PPDNSNGDPMT 5055
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,192,190
Number of Sequences: 37544
Number of extensions: 302937
Number of successful extensions: 725
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -