Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1o16
         (128 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111...    27   2.1  
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411...    27   2.1  
08_02_0650 - 19708479-19710507,19711033-19711889                       25   6.5  

>05_05_0075 +
           22209322-22210041,22210323-22210391,22210775-22211145,
           22212291-22212351,22212496-22213086
          Length = 603

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 97  LALRTLHKHFKILKSLL 47
           +ALRT+ KHFK LK ++
Sbjct: 297 MALRTMSKHFKYLKGII 313


>01_06_1342 -
           36438869-36439459,36439567-36439627,36440751-36441130,
           36441955-36442761
          Length = 612

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 97  LALRTLHKHFKILKSLL 47
           LALR + KHFK LKS++
Sbjct: 303 LALRAMAKHFKCLKSMI 319


>08_02_0650 - 19708479-19710507,19711033-19711889
          Length = 961

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 30  HLKRSGRSDLRILKC 74
           H+K+ G  DL++LKC
Sbjct: 798 HMKKVGEEDLQVLKC 812


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,298
Number of Sequences: 37544
Number of extensions: 19543
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 14,793,348
effective HSP length: 23
effective length of database: 13,929,836
effective search space used: 264666884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)