Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1o16
         (128 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   0.78 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   1.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   7.2  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 0.78
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 44  RKKRFENFKVFVKCSKC 94
           R  R +++K  +KC KC
Sbjct: 137 RNDRIDSYKSNLKCDKC 153


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 29  SPEAKRKKRFENF 67
           SPE   K+RFE F
Sbjct: 245 SPELSNKQRFEYF 257


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 84  HFTNTLKFSNRFFRFAS 34
           H T  L F NR F  AS
Sbjct: 175 HVTFKLTFDNRAFTQAS 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,277
Number of Sequences: 438
Number of extensions: 200
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 23
effective length of database: 136,269
effective search space used:  2589111
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)