Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1o08
(406 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar... 87 9e-17
UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary... 74 9e-13
UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ... 73 2e-12
UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn... 66 2e-10
UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta... 61 9e-09
UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;... 58 5e-08
UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu... 55 5e-07
UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=... 54 1e-06
UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa... 52 4e-06
UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|... 51 1e-05
UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell... 50 2e-05
UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archa... 47 1e-04
UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN ... 47 2e-04
UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n... 46 3e-04
UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1; Encepha... 44 9e-04
UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9; Euryar... 44 9e-04
UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|R... 43 0.003
UniRef50_Q9IMU3 Cluster: VP1; n=5; Banna virus|Rep: VP1 - Banna ... 34 1.2
UniRef50_UPI0000DB6B2B Cluster: PREDICTED: similar to CG8561-PA;... 32 3.8
UniRef50_Q55BQ3 Cluster: SCY1 family protein kinase; n=1; Dictyo... 32 5.0
UniRef50_A6LGM6 Cluster: Putative outer membrane protein, probab... 31 6.6
UniRef50_Q21QM6 Cluster: Putative uncharacterized protein precur... 31 8.7
UniRef50_A7S7T2 Cluster: Predicted protein; n=2; Nematostella ve... 31 8.7
>UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137;
Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens
(Human)
Length = 69
Score = 87.4 bits (207), Expect = 9e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +3
Query: 75 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 227
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13;
Eukaryota|Rep: 40S ribosomal protein S28 -
Schizosaccharomyces pombe (Fission yeast)
Length = 68
Score = 74.1 bits (174), Expect = 9e-13
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = +3
Query: 78 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 224
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal
protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to
ribosomal protein S28 - Pan troglodytes
Length = 356
Score = 73.3 bits (172), Expect = 2e-12
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = +3
Query: 75 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPV 206
+P LARV KVLGRTGSQGQCTQV+V+F+ +TSR IIRNVKGPV
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVKFMDDTSRSIIRNVKGPV 50
>UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13;
Magnoliophyta|Rep: 40S ribosomal protein S28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 66.5 bits (155), Expect = 2e-10
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +3
Query: 69 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 227
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Metazoa
group|Rep: Ribosomal protein S28e - Aspergillus
fumigatus (Sartorya fumigata)
Length = 56
Score = 60.9 bits (141), Expect = 9e-09
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = +3
Query: 75 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGP 203
+P L +V +VLGRTGS+G TQV+VEF+ +TSR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGP 48
>UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;
n=2; Sordariomycetes|Rep: 40S ribosomal protein S28-like
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 85
Score = 58.4 bits (135), Expect = 5e-08
Identities = 27/43 (62%), Positives = 34/43 (79%)
Frame = +3
Query: 75 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGP 203
+P L +V +VLGRTGS+G TQV+VEF+ + SR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQSRSIIRNVKGP 48
>UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular
organisms|Rep: 30S ribosomal protein S28e - Methanopyrus
kandleri
Length = 74
Score = 55.2 bits (127), Expect = 5e-07
Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Frame = +3
Query: 90 ARVVKVLGRTGSQGQCTQVKVEFI--GETSRQIIRNVKGPVRDGDIL 224
A VV++LGRTG G+ TQVKV + + R I RNVKGPVR+GDIL
Sbjct: 15 AEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDIL 61
>UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1;
Trypanosoma brucei|Rep: 40S ribosomal protein S33,
putative - Trypanosoma brucei
Length = 103
Score = 54.0 bits (124), Expect = 1e-06
Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 5/49 (10%)
Frame = +3
Query: 96 VVKVLGRTGSQGQCTQVKVEFIG-----ETSRQIIRNVKGPVRDGDILT 227
++KVLGRTGS+G TQV+V + E +R I+RNVKGP ++GD+L+
Sbjct: 43 IIKVLGRTGSRGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKEGDMLS 91
>UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27;
Archaea|Rep: 30S ribosomal protein S28e - Methanococcus
jannaschii
Length = 75
Score = 52.0 bits (119), Expect = 4e-06
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Frame = +3
Query: 75 KPNVLARVVKVLGRTGSQGQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 224
K V A V++V+GRTG G QV+ + +G +T R ++RNVKGPV+ GDI+
Sbjct: 8 KEAVAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDII 59
>UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila
melanogaster|Rep: IP17744p - Drosophila melanogaster
(Fruit fly)
Length = 73
Score = 50.8 bits (116), Expect = 1e-05
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = +3
Query: 90 ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 221
ARV+K+L R G++G T+V+V+ + + Q +R VKGPVR GD+
Sbjct: 7 ARVIKILNRIGARGILTEVRVQLVDQPKMQFMRTVKGPVRLGDV 50
>UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella
natans|Rep: Ribosomal protein S28 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 65
Score = 49.6 bits (113), Expect = 2e-05
Identities = 22/43 (51%), Positives = 31/43 (72%)
Frame = +3
Query: 96 VVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 224
V K+L + G +GQ TQV+V+ I + +IRN+KGPVR GDI+
Sbjct: 13 VTKILKKVGKRGQGTQVRVKSITNIKKTLIRNIKGPVRIGDIV 55
>UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14;
Archaea|Rep: 30S ribosomal protein S28e - Sulfolobus
solfataricus
Length = 83
Score = 47.2 bits (107), Expect = 1e-04
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +3
Query: 90 ARVVKVLGRTGSQGQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 224
A V+++L RTG G+ TQV+V + + R + RNVKGPVR GDIL
Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDIL 67
>UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence; n=2;
Mus musculus|Rep: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 148
Score = 46.8 bits (106), Expect = 2e-04
Identities = 26/43 (60%), Positives = 28/43 (65%)
Frame = -1
Query: 217 SPSRTGPFTFLMI*RLVSPMNSTFT*VHWP*EPVRPSTFTTRA 89
SP RTGP TF M RLVS ++ST T H P EPV PST T A
Sbjct: 84 SPFRTGPLTFQMKERLVSFIDSTPTCAHCPCEPVLPSTLVTLA 126
>UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n=1;
Gallus gallus|Rep: UPI0000EC9EE1 UniRef100 entry -
Gallus gallus
Length = 112
Score = 46.0 bits (104), Expect = 3e-04
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = -3
Query: 263 SQPPSFTFRFKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAKH 105
+QPP R ++ EDVS+ HV+DD A + +EL HLS L L A+H
Sbjct: 56 AQPPRLALRLEQGEDVSLPHRPLHVADDGAARVVHELHAHLSALPLGAGPAQH 108
>UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S28
- Encephalitozoon cuniculi
Length = 65
Score = 44.4 bits (100), Expect = 9e-04
Identities = 24/51 (47%), Positives = 29/51 (56%)
Frame = +3
Query: 72 DKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 224
++ V VLGRTG G TQVK+E + R I R VKGPV GDI+
Sbjct: 3 EQQEFFGEVTHVLGRTGGSGLLTQVKMELM-HNKRTIQRAVKGPVAVGDII 52
>UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S28e -
Halobacterium salinarium (Halobacterium halobium)
Length = 74
Score = 44.4 bits (100), Expect = 9e-04
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +3
Query: 90 ARVVKVLGRTGSQGQCTQVK--VEFIGETSRQIIRNVKGPVRDGDIL 224
A V++V+G+TG G+ QVK ++ G R I RNV GPVR GD++
Sbjct: 13 AEVIEVVGKTGMHGEAMQVKCRIQEGGNQGRIITRNVLGPVRVGDVI 59
>UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|Rep:
OTTHUMP00000028879 - Homo sapiens (Human)
Length = 57
Score = 42.7 bits (96), Expect = 0.003
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +3
Query: 78 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 188
P L + KVLGRT SQGQCT+V VEF+ S+++ R
Sbjct: 8 PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44
>UniRef50_Q9IMU3 Cluster: VP1; n=5; Banna virus|Rep: VP1 - Banna virus
Length = 1219
Score = 33.9 bits (74), Expect = 1.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 236 FKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAKHFHDTSKNV 81
FK+ DV+ G H+S+ L +P + HL+ L +T K D + ++
Sbjct: 963 FKRKNDVNPDGGGIHISEGLKRLMPEYCERHLNELVYKTLDDKVIRDYTSDI 1014
>UniRef50_UPI0000DB6B2B Cluster: PREDICTED: similar to CG8561-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG8561-PA
- Apis mellifera
Length = 623
Score = 32.3 bits (70), Expect = 3.8
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -3
Query: 173 AGLPNELDLHLSTLALRTSTAKHFHDTSKNVGFIH 69
+GL N DL+LS+ L+ TA F D +N+G++H
Sbjct: 455 SGLENLKDLNLSSNKLQKITADMFADLPQNLGYLH 489
>UniRef50_Q55BQ3 Cluster: SCY1 family protein kinase; n=1;
Dictyostelium discoideum AX4|Rep: SCY1 family protein
kinase - Dictyostelium discoideum AX4
Length = 1125
Score = 31.9 bits (69), Expect = 5.0
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 9 KHASFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVK 149
K +F ++VL A+S+ILQ+K KP VL+ V++ L + Q+K
Sbjct: 423 KKETFQSKVLPAISNILQSKEPKPEVLSCVLENLPMLLQKCSLDQIK 469
>UniRef50_A6LGM6 Cluster: Putative outer membrane protein, probably
involved in nutrient binding; n=1; Parabacteroides
distasonis ATCC 8503|Rep: Putative outer membrane
protein, probably involved in nutrient binding -
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
/ NCTC11152)
Length = 605
Score = 31.5 bits (68), Expect = 6.6
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 141 EYTGPENQYGQALSR-HEQERWVYPFWLVISSLMQLTHVHQS 19
+YTGPE+ YG +SR EQE W + + S ++L +S
Sbjct: 165 QYTGPEDLYGLQVSRDKEQEVWDFILTELDESALELPETRES 206
>UniRef50_Q21QM6 Cluster: Putative uncharacterized protein
precursor; n=1; Rhodoferax ferrireducens T118|Rep:
Putative uncharacterized protein precursor - Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
Length = 240
Score = 31.1 bits (67), Expect = 8.7
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 233 KKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAK 108
K D+ VT + V+D +T GLP+ +H+S ++ + S K
Sbjct: 113 KMRHDILVTAVYWRVNDHVTNGLPSSQPIHMSQMSRKASEPK 154
>UniRef50_A7S7T2 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 238
Score = 31.1 bits (67), Expect = 8.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 96 VVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 227
V+ LG T S T++ V+F+ ET RQ++ K P+ D+ T
Sbjct: 173 VIAALGNTWSHAVNTRLIVQFLDETYRQVM-IAKSPIAPFDVFT 215
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,539,591
Number of Sequences: 1657284
Number of extensions: 6733095
Number of successful extensions: 16224
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 15952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16214
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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