Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1o08
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37831| Best HMM Match : MAM (HMM E-Value=0)                         30   0.62 
SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)                        30   0.62 
SB_45686| Best HMM Match : T-box (HMM E-Value=0)                       27   4.4  
SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   4.4  

>SB_37831| Best HMM Match : MAM (HMM E-Value=0)
          Length = 563

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 111 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 221
           G  G + Q  QV + + GET + ++  V+G    GDI
Sbjct: 151 GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 187


>SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)
          Length = 89

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 111 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 221
           G  G + Q  QV + + GET + ++  V+G    GDI
Sbjct: 22  GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 58


>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
          Length = 947

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = -3

Query: 257 PPSFTFRFKKSEDVSVTDGSFHVSDDLTAGLPNELD 150
           P S   RFK SED   T  SF  SD++  G P ELD
Sbjct: 568 PSSSPKRFKTSEDEEPTAQSFE-SDEI-PGSPEELD 601


>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 15  ASFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQC 137
           A  GAR +    ++    +    VLAR  + L R G++G+C
Sbjct: 594 AVLGARAVCVAGALSARSLSGHAVLARSARALTRLGARGRC 634


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 120  QYGQALSRHEQERWVYPFWLVISSLMQLTHVHQSWR 13
            QYGQ      Q+ WV  +W+  S       ++++WR
Sbjct: 4879 QYGQVRGNRVQQMWVTAYWIRSSQDGVKFTLYRNWR 4914


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,104,712
Number of Sequences: 59808
Number of extensions: 220812
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)